Phenotype measure:   Jaxpheno6   pct_CD4_16

ID, description, units MPD:23102   pct_CD4_16   splenic CD4 T cells (percentage of total viable cells)   [%]  at age age 16wks
Data set, strains Jaxpheno6   inbred   8 strains     sex: both     age: 16wks
Procedure immune cell quantification
Ontology mappings

  STRAIN COMPARISON PLOT
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Jaxpheno6 - splenic CD4 T cells (percentage of total viable cells) at age age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains6 strains
Mean of the strain means12.7   % 14.8   %
Median of the strain means13.6   % 16.7   %
SD of the strain means± 6.46 ± 7.52
Coefficient of variation (CV)0.510 0.508
Min–max range of strain means0.0500   –   22.9   % 0.134   –   21.8   %
Mean sample size per strain8.0   mice 7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 5 3349.4331 669.8866 102.2869 < 0.0001
sex:strain 5 52.2503 10.4501 1.5956 0.1699
Residuals 86 563.2222 6.5491
sex 1 44.058 44.058 6.7273 0.0112


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 8.87 1.29   5 0.579 0.146 7.59, 11.0 -0.59
BALB/cByJ f 15.2 1.91   10 0.603 0.125 12.1, 18.5 0.39
BALB/cByJ m 17.2 1.95   9 0.649 0.113 14.9, 20.5 0.32
C3H/HeJ f 13.3 1.66   10 0.524 0.125 11.0, 15.4 0.1
C3H/HeJ m 15.4 0.865   5 0.387 0.0563 14.5, 16.5 0.08
C57BL/6J f 12.2 1.39   5 0.622 0.114 10.3, 14.2 -0.07
CBA/J f 13.9 1.5   9 0.499 0.108 11.0, 15.7 0.19
CBA/J m 16.2 1.32   10 0.418 0.0818 14.0, 18.2 0.19
FVB/NJ f 15.0 5.01   10 1.59 0.334 5.6, 18.4 0.36
FVB/NJ m 18.1 2.75   5 1.23 0.152 14.9, 22.3 0.44
NOD.CB17-Prkdcscid/J f 0.05 0.0524   5 0.0235 1.05 -1.95
NOD.CB17-Prkdcscid/J m 0.134 0.153   5 0.0686 1.14 0.01, 0.4 -1.95
NOD/ShiLtJ f 22.9 3.63   10 1.15 0.158 15.7, 27.6 1.58
NOD/ShiLtJ m 21.8 2.66   10 0.842 0.122 18.6, 25.6 0.93


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BALB/cByJ f 15.23 0.8093 16.8388 13.6212
BALB/cByJ m 17.1667 0.853 18.8625 15.4709
C3H/HeJ f 13.28 0.8093 14.8888 11.6712
C3H/HeJ m 15.36 1.1445 17.6351 13.0849
CBA/J f 13.8667 0.853 15.5625 12.1709
CBA/J m 16.18 0.8093 17.7888 14.5712
FVB/NJ f 15.001 0.8093 16.6098 13.3922
FVB/NJ m 18.12 1.1445 20.3951 15.8449
NOD.CB17-Prkdcscid/J f 0.05 1.1445 2.3251 0.0
NOD.CB17-Prkdcscid/J m 0.134 1.1445 2.4091 0.0
NOD/ShiLtJ f 22.88 0.8093 24.4888 21.2712
NOD/ShiLtJ m 21.78 0.8093 23.3888 20.1712


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BALB/cByJ both 16.1983 0.5879 17.3671 15.0296
C3H/HeJ both 14.32 0.7008 15.7132 12.9268
CBA/J both 15.0233 0.5879 16.1921 13.8546
FVB/NJ both 16.5605 0.7008 17.9537 15.1673
NOD.CB17-Prkdcscid/J both 0.092 0.8093 1.7008 0.0
NOD/ShiLtJ both 22.33 0.5722 23.4676 21.1924




  GWAS USING LINEAR MIXED MODELS