Project measure / variable:   Jaxpheno5   bw12

ID, description, units MPD:23010   bw12   body weight   [g]  at age 12 wks  
Data set, strains Jaxpheno5   inbred   10 strains     sex: both     age: 12wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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Jaxpheno5 - body weight at age 12 wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means22.4   g 28.1   g
Median of the strain means22.3   g 27.9   g
SD of the strain means± 1.22 ± 1.76
Coefficient of variation (CV)0.0544 0.0627
Min–max range of strain means20.6   –   25.0   g 25.6   –   31.9   g
Mean sample size per strain85.9   mice 86.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 6466.1644 6466.1644 1900.9848 < 0.0001
strain 6 538.0706 89.6784 26.3645 < 0.0001
sex:strain 6 173.1973 28.8662 8.4864 < 0.0001
Residuals 706 2401.4458 3.4015


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 22.0 1.7   157 0.136 0.077 -0.34
A/J m 25.6 2.6   171 0.199 0.102 -1.42
B6D2F1/J f 23.3 2.48   31 0.445 0.106 17.9, 27.2 0.73
B6D2F1/J m 29.6 2.28   28 0.43 0.0769 25.8, 35.3 0.85
B6.SJL-Ptprca Pepcb/BoyJ f 22.2 1.6   80 0.179 0.072 -0.17
B6.SJL-Ptprca Pepcb/BoyJ m 28.7 2.2   78 0.249 0.077 0.33
BALB/cByJ f 23.0 1.68   58 0.221 0.0731 19.2, 26.5 0.48
BALB/cByJ m 27.5 1.41   59 0.184 0.0512 24.6, 31.0 -0.35
C57BL/6J f 20.6 1.69   108 0.163 0.0822 16.5, 26.1 -1.48
C57BL/6J m 27.8 1.58   104 0.155 0.0568 24.5, 31.7 -0.18
CBA/J f 22.4 2.49   56 0.333 0.111 16.3, 28.1 -0.01
CBA/J m 28.0 1.93   66 0.237 0.0689 23.0, 33.1 -0.06
DBA/2J f 21.2 1.81   30 0.331 0.0857 15.0, 24.2 -0.99
DBA/2J m 26.1 2.04   30 0.373 0.0783 21.9, 31.1 -1.14
NOD.CB17-Prkdcscid/J f 21.7 1.2   80 0.134 0.055 -0.58
NOD.CB17-Prkdcscid/J m 28.2 1.9   77 0.217 0.067 0.05
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ f 25.0 1.7   157 0.136 0.068 2.12
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ m 31.9 2.3   160 0.182 0.072 2.15
NOD/ShiLtJ f 22.7 1.8   117 0.166 0.079 0.24
NOD/ShiLtJ m 27.7 1.8   114 0.169 0.065 -0.23


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 23.3161290323 0.3312479479 23.9664780035 22.665780061
B6D2F1/J m 29.6 0.3485419268 30.2843027556 28.9156972444
BALB/cByJ f 23.0224137931 0.2421698354 23.4978730505 22.5469545357
BALB/cByJ m 27.5474576271 0.2401087781 28.0188703492 27.076044905
C57BL/6J f 20.5824074074 0.1774688625 20.9308373158 20.233977499
C57BL/6J m 27.825 0.1808495255 28.180067265 27.469932735
CBA/J f 22.45 0.24645636 22.9338751189 21.9661248811
CBA/J m 27.9893939394 0.2270189317 28.4351069759 27.5436809029
DBA/2J f 21.1566666667 0.3367234915 21.817765936 20.4955673973
DBA/2J m 26.1266666667 0.3367234915 26.787765936 25.4655673973
NOD.CB17-Prkdcscid/J f 23.035 0.4124003693 23.8446779396 22.2253220604
NOD.CB17-Prkdcscid/J m 29.685 0.4124003693 30.4946779396 28.8753220604
NOD/ShiLtJ f 22.8046153846 0.2287585658 23.2537438966 22.3554868726
NOD/ShiLtJ m 28.9022222222 0.2749335796 29.4420075153 28.3624369291


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 26.4580645161 0.2404197775 26.9300878328 25.9860411995
BALB/cByJ both 25.2849357101 0.1705127961 25.619708566 24.9501628543
C57BL/6J both 24.2037037037 0.1266903193 24.4524385845 23.9549688229
CBA/J both 25.2196969697 0.1675397958 25.5486328455 24.8907610939
DBA/2J both 23.6416666667 0.2380994642 24.1091344431 23.1741988903
NOD.CB17-Prkdcscid/J both 26.36 0.2916110977 26.9325287617 25.7874712383
NOD/ShiLtJ both 25.8534188034 0.178828797 26.2045187119 25.502318895




  GWAS USING LINEAR MIXED MODELS