Project measure / variable:   Jaxpheno5   bw09

ID, description, units MPD:23007   bw09   body weight   [g]  at age 9 wks  
Data set, strains Jaxpheno5   inbred   10 strains     sex: both     age: 9wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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Jaxpheno5 - body weight at age 9 wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means20.6   g 25.7   g
Median of the strain means20.4   g 25.4   g
SD of the strain means± 1.25 ± 1.78
Coefficient of variation (CV)0.0609 0.0692
Min–max range of strain means18.9   –   23.5   g 23.5   –   30.0   g
Mean sample size per strain90.9   mice 93.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4899.1493 4899.1493 1915.1596 < 0.0001
strain 6 344.2162 57.3694 22.4266 < 0.0001
sex:strain 6 90.3 15.05 5.8833 < 0.0001
Residuals 705 1803.453 2.5581


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 20.3 1.5   158 0.119 0.074 -0.21
A/J m 23.5 2.5   178 0.187 0.106 -1.24
B6D2F1/J f 20.4 1.88   31 0.338 0.092 16.0, 24.6 -0.13
B6D2F1/J m 26.0 1.57   28 0.297 0.0606 23.2, 30.2 0.17
B6.SJL-Ptprca Pepcb/BoyJ f 19.7 1.9   118 0.175 0.096 -0.69
B6.SJL-Ptprca Pepcb/BoyJ m 25.7 2.0   115 0.187 0.078 0.0
BALB/cByJ f 20.5 1.46   58 0.192 0.0711 17.8, 23.6 -0.05
BALB/cByJ m 25.0 1.32   59 0.172 0.0528 22.4, 27.7 -0.39
C57BL/6J f 18.9 1.42   108 0.137 0.0753 14.7, 22.9 -1.33
C57BL/6J m 24.8 1.62   104 0.159 0.0651 21.2, 31.4 -0.51
CBA/J f 20.8 1.91   55 0.258 0.0921 15.9, 24.3 0.19
CBA/J m 25.0 1.6   66 0.197 0.0642 21.0, 28.3 -0.39
DBA/2J f 19.5 1.55   30 0.283 0.0795 14.4, 22.3 -0.85
DBA/2J m 24.2 1.71   30 0.312 0.0705 19.4, 27.8 -0.84
NOD.CB17-Prkdcscid/J f 20.6 1.4   80 0.157 0.068 0.03
NOD.CB17-Prkdcscid/J m 26.3 1.8   77 0.205 0.068 0.34
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ f 23.5 1.6   197 0.114 0.068 2.35
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ m 30.0 2.0   200 0.141 0.067 2.42
NOD/ShiLtJ f 21.4 1.6   119 0.147 0.075 0.67
NOD/ShiLtJ m 26.5 1.9   118 0.175 0.072 0.45


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 20.4387096774 0.2872612256 21.0026995792 19.8747197756
B6D2F1/J m 25.9678571429 0.302258721 26.5612921462 25.3744221395
BALB/cByJ f 20.5189655172 0.2100118783 20.9312891031 20.1066419314
BALB/cByJ m 25.013559322 0.2082245107 25.4223737072 24.6047449369
C57BL/6J f 18.9111111111 0.1539026076 19.2132734248 18.6089487975
C57BL/6J m 24.8423076923 0.1568343493 25.1502259958 24.5343893888
CBA/J f 20.7709090909 0.2156634315 21.1943285668 20.3474896151
CBA/J m 25.0045454545 0.1968728771 25.3910727849 24.6180181242
DBA/2J f 19.4833333333 0.2920096667 20.0566460139 18.9100206528
DBA/2J m 24.2266666667 0.2920096667 24.7999793472 23.6533539861
NOD.CB17-Prkdcscid/J f 21.005 0.3576373417 21.7071617652 20.3028382348
NOD.CB17-Prkdcscid/J m 26.965 0.3576373417 27.6671617652 26.2628382348
NOD/ShiLtJ f 20.6676923077 0.1983815036 21.0571815766 20.2782030388
NOD/ShiLtJ m 26.4666666667 0.2384248945 26.9347745101 25.9985588232


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 23.2032834101 0.2084942122 23.6126273097 22.7939395105
BALB/cByJ both 22.7662624196 0.1478702437 23.0565811845 22.4759436547
C57BL/6J both 21.8767094017 0.1098669943 22.0924150724 21.661003731
CBA/J both 22.8877272727 0.1460048334 23.174383613 22.6010709325
DBA/2J both 21.855 0.2064820155 22.2603932841 21.4496067159
NOD.CB17-Prkdcscid/J both 23.985 0.2528877895 24.4815033456 23.4884966544
NOD/ShiLtJ both 23.5671794872 0.1550819552 23.8716572547 23.2627017196




  GWAS USING LINEAR MIXED MODELS