Project measure / variable:   Jaxpheno4   CHr16

ID, description, units MPD:22978   CHr16   reticulocyte corpuscular hemoglobin (CHr)   [pg]  at age age 16wks  
Data set, strains Jaxpheno4   inbred   9 strains     sex: both     age: 16wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Jaxpheno4 - reticulocyte corpuscular hemoglobin (CHr) at age age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means16.5   pg 16.2   pg
Median of the strain means16.7   pg 16.6   pg
SD of the strain means± 0.948 ± 0.970
Coefficient of variation (CV)0.0574 0.0597
Min–max range of strain means14.8   –   17.7   pg 14.7   –   17.3   pg
Mean sample size per strain15.6   mice 15.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.3091 4.3091 36.8872 < 0.0001
strain 8 221.7673 27.7209 237.3001 < 0.0001
sex:strain 8 2.504 0.313 2.6793 0.0075
Residuals 283 33.0595 0.1168


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 16.0 0.438   16 0.109 0.0273 15.3, 16.7 -0.55
B6D2F1/J m 15.3 0.262   10 0.0827 0.0171 14.8, 15.6 -0.96
BALB/cByJ f 16.5 0.326   21 0.0712 0.0198 16.0, 17.4 -0.02
BALB/cByJ m 16.2 0.254   22 0.0542 0.0157 15.6, 16.5 -0.03
C3H/HeJ f 17.2 0.222   10 0.0702 0.0129 16.8, 17.5 0.71
C3H/HeJ m 17.0 0.174   11 0.0524 0.0102 16.8, 17.3 0.79
C57BL/6J f 15.5 0.475   35 0.0803 0.0305 14.7, 16.8 -1.08
C57BL/6J m 15.1 0.326   30 0.0594 0.0215 14.6, 15.8 -1.17
CBA/J f 16.7 0.331   22 0.0707 0.0198 16.2, 17.3 0.19
CBA/J m 16.7 0.421   23 0.0878 0.0253 16.0, 17.6 0.48
DBA/2J f 14.8 0.305   11 0.0919 0.0206 14.1, 15.1 -1.82
DBA/2J m 14.7 0.261   11 0.0787 0.0178 14.1, 15.0 -1.58
FVB/NJ f 16.8 0.35   10 0.111 0.0208 16.0, 17.3 0.29
FVB/NJ m 16.6 0.277   11 0.0835 0.0166 16.3, 17.2 0.38
NOD.CB17-Prkdcscid/J f 17.5 0.403   10 0.127 0.0231 17.0, 18.3 1.03
NOD.CB17-Prkdcscid/J m 17.2 0.347   10 0.11 0.0201 16.8, 17.9 1.0
NOD/ShiLtJ f 17.7 0.282   19 0.0647 0.0159 17.2, 18.2 1.24
NOD/ShiLtJ m 17.3 0.227   19 0.0522 0.0132 16.9, 17.7 1.1


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 16.0375 0.0854 16.2057 15.8693
B6D2F1/J m 15.28 0.1081 15.4927 15.0673
BALB/cByJ f 16.4571 0.0746 16.604 16.3103
BALB/cByJ m 16.15 0.0729 16.2934 16.0066
C3H/HeJ f 17.16 0.1081 17.3727 16.9473
C3H/HeJ m 17.0273 0.1031 17.2301 16.8244
C57BL/6J f 15.5429 0.0578 15.6566 15.4291
C57BL/6J m 15.1433 0.0624 15.2662 15.0205
CBA/J f 16.7318 0.0729 16.8753 16.5884
CBA/J m 16.6522 0.0713 16.7925 16.5119
DBA/2J f 14.8091 0.1031 15.0119 14.6062
DBA/2J m 14.6727 0.1031 14.8756 14.4699
FVB/NJ f 16.84 0.1081 17.0527 16.6273
FVB/NJ m 16.6455 0.1031 16.8483 16.4426
NOD.CB17-Prkdcscid/J f 17.47 0.1081 17.6827 17.2573
NOD.CB17-Prkdcscid/J m 17.25 0.1081 17.4627 17.0373
NOD/ShiLtJ f 17.6947 0.0784 17.8491 17.5404
NOD/ShiLtJ m 17.2789 0.0784 17.4333 17.1246


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 15.6588 0.0689 15.7944 15.5231
BALB/cByJ both 16.3036 0.0521 16.4062 16.2009
C3H/HeJ both 17.0936 0.0747 17.2406 16.9467
C57BL/6J both 15.3431 0.0425 15.4268 15.2594
CBA/J both 16.692 0.051 16.7923 16.5917
DBA/2J both 14.7409 0.0729 14.8843 14.5975
FVB/NJ both 16.7427 0.0747 16.8897 16.5958
NOD.CB17-Prkdcscid/J both 17.36 0.0764 17.5104 17.2096
NOD/ShiLtJ both 17.4868 0.0554 17.596 17.3777




  GWAS USING LINEAR MIXED MODELS