Project measure / variable:   Jaxpheno4   HGB16

ID, description, units MPD:22976   HGB16   hemoglobin (HGB)   [g/dL]  at age age 16wks  
Data set, strains Jaxpheno4   inbred   9 strains     sex: both     age: 16wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Jaxpheno4 - hemoglobin (HGB) at age age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means15.9   g/dL 16.0   g/dL
Median of the strain means16.0   g/dL 16.0   g/dL
SD of the strain means± 0.791 ± 0.972
Coefficient of variation (CV)0.0498 0.0609
Min–max range of strain means14.9   –   16.8   g/dL 14.5   –   17.3   g/dL
Mean sample size per strain15.7   mice 15.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0018 0.0018 0.0045 0.9465
strain 8 172.3223 21.5403 53.4673 < 0.0001
sex:strain 8 11.7079 1.4635 3.6327 0.0005
Residuals 286 115.2204 0.4029


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 16.5 0.755   16 0.189 0.0457 15.7, 17.7 0.8
B6D2F1/J m 17.3 0.427   10 0.135 0.0246 16.7, 17.9 1.38
BALB/cByJ f 16.8 0.555   21 0.121 0.033 15.8, 17.8 1.18
BALB/cByJ m 17.0 0.342   22 0.0728 0.0201 16.3, 17.6 1.07
C3H/HeJ f 15.1 0.406   10 0.128 0.0268 14.4, 15.5 -0.97
C3H/HeJ m 15.6 0.485   11 0.146 0.0311 14.8, 16.5 -0.37
C57BL/6J f 16.4 0.313   35 0.0528 0.019 15.8, 17.2 0.67
C57BL/6J m 16.0 0.614   30 0.112 0.0383 14.8, 16.9 0.05
CBA/J f 15.1 0.703   22 0.15 0.0466 13.2, 16.4 -0.97
CBA/J m 15.4 0.488   23 0.102 0.0317 14.3, 16.3 -0.57
DBA/2J f 16.0 0.353   11 0.106 0.0221 15.5, 16.4 0.17
DBA/2J m 16.2 0.541   11 0.163 0.0335 15.4, 17.3 0.25
FVB/NJ f 14.9 0.527   10 0.167 0.0355 13.7, 15.7 -1.22
FVB/NJ m 14.8 0.468   11 0.141 0.0316 14.0, 15.7 -1.19
NOD.CB17-Prkdcscid/J f 15.2 0.253   10 0.08 0.0166 14.9, 15.6 -0.84
NOD.CB17-Prkdcscid/J m 14.5 1.44   10 0.456 0.0994 10.7, 15.5 -1.5
NOD/ShiLtJ f 16.8 1.08   20 0.242 0.0643 15.2, 19.8 1.18
NOD/ShiLtJ m 16.8 0.782   21 0.171 0.0465 14.2, 17.8 0.87


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 16.525 0.1587 16.8373 16.2127
B6D2F1/J m 17.34 0.2007 17.7351 16.9449
BALB/cByJ f 16.8143 0.1385 17.0869 16.5417
BALB/cByJ m 16.9636 0.1353 17.23 16.6973
C3H/HeJ f 15.13 0.2007 15.5251 14.7349
C3H/HeJ m 15.6182 0.1914 15.9949 15.2415
C57BL/6J f 16.4371 0.1073 16.6483 16.226
C57BL/6J m 16.0367 0.1159 16.2648 15.8086
CBA/J f 15.0955 0.1353 15.3618 14.8291
CBA/J m 15.387 0.1323 15.6475 15.1265
DBA/2J f 15.9636 0.1914 16.3403 15.587
DBA/2J m 16.1636 0.1914 16.5403 15.787
FVB/NJ f 14.87 0.2007 15.2651 14.4749
FVB/NJ m 14.7909 0.1914 15.1676 14.4142
NOD.CB17-Prkdcscid/J f 15.22 0.2007 15.6151 14.8249
NOD.CB17-Prkdcscid/J m 14.52 0.2007 14.9151 14.1249
NOD/ShiLtJ f 16.845 0.1419 17.1244 16.5656
NOD/ShiLtJ m 16.8286 0.1385 17.1012 16.5559


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 16.9325 0.1279 17.1843 16.6807
BALB/cByJ both 16.889 0.0968 17.0795 16.6984
C3H/HeJ both 15.3741 0.1387 15.647 15.1012
C57BL/6J both 16.2369 0.079 16.3923 16.0815
CBA/J both 15.2412 0.0946 15.4275 15.0549
DBA/2J both 16.0636 0.1353 16.33 15.7973
FVB/NJ both 14.8305 0.1387 15.1034 14.5575
NOD.CB17-Prkdcscid/J both 14.87 0.1419 15.1494 14.5906
NOD/ShiLtJ both 16.8368 0.0992 17.032 16.6416




  GWAS USING LINEAR MIXED MODELS