Project measure / variable:   Jaxpheno4   pct_Retic16

ID, description, units MPD:22963   pct_Retic16   reticulocyte differential   [%]  at age age 16wks  
Data set, strains Jaxpheno4   inbred   9 strains     sex: both     age: 16wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Jaxpheno4 - reticulocyte differential at age age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means3.22   % 3.16   %
Median of the strain means3.07   % 3.05   %
SD of the strain means± 0.625 ± 0.576
Coefficient of variation (CV)0.194 0.182
Min–max range of strain means2.46   –   4.15   % 2.26   –   3.84   %
Mean sample size per strain15.7   mice 15.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0488 0.0488 0.0974 0.7552
strain 8 74.135 9.2669 18.4844 < 0.0001
sex:strain 8 2.1556 0.2695 0.5375 0.8279
Residuals 286 143.3815 0.5013


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 2.46 0.768   16 0.192 0.312 1.3, 4.1 -1.22
B6D2F1/J m 2.51 0.511   10 0.162 0.204 1.9, 3.5 -1.13
BALB/cByJ f 2.98 0.447   21 0.0976 0.15 2.2, 4.0 -0.39
BALB/cByJ m 3.05 0.325   22 0.0692 0.106 2.2, 3.6 -0.2
C3H/HeJ f 3.1 0.68   10 0.215 0.219 1.9, 3.7 -0.2
C3H/HeJ m 3.43 0.179   11 0.0541 0.0523 3.0, 3.7 0.46
C57BL/6J f 3.07 0.458   35 0.0775 0.149 2.2, 4.2 -0.25
C57BL/6J m 2.85 0.41   30 0.0749 0.144 2.3, 4.6 -0.54
CBA/J f 2.94 0.74   22 0.158 0.252 1.7, 4.7 -0.45
CBA/J m 2.99 0.518   23 0.108 0.173 2.2, 4.3 -0.3
DBA/2J f 2.48 1.03   11 0.312 0.417 1.2, 4.3 -1.19
DBA/2J m 2.26 0.42   11 0.127 0.186 1.3, 2.9 -1.57
FVB/NJ f 3.92 0.94   10 0.297 0.24 1.6, 5.3 1.11
FVB/NJ m 3.74 0.555   11 0.167 0.149 2.7, 4.4 1.0
NOD.CB17-Prkdcscid/J f 4.15 0.64   10 0.202 0.154 3.2, 5.1 1.48
NOD.CB17-Prkdcscid/J m 3.84 0.433   10 0.137 0.113 3.3, 4.4 1.18
NOD/ShiLtJ f 3.91 1.2   20 0.269 0.308 1.1
NOD/ShiLtJ m 3.8 1.34   21 0.292 0.351 1.11


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 2.4625 0.177 2.8109 2.1141
B6D2F1/J m 2.51 0.2239 2.9507 2.0693
BALB/cByJ f 2.9762 0.1545 3.2803 2.6721
BALB/cByJ m 3.0545 0.151 3.3517 2.7574
C3H/HeJ f 3.1 0.2239 3.5407 2.6593
C3H/HeJ m 3.4273 0.2135 3.8475 3.0071
C57BL/6J f 3.0743 0.1197 3.3099 2.8387
C57BL/6J m 2.8533 0.1293 3.1078 2.5989
CBA/J f 2.9409 0.151 3.238 2.6438
CBA/J m 2.987 0.1476 3.2776 2.6964
DBA/2J f 2.4818 0.2135 2.902 2.0616
DBA/2J m 2.2636 0.2135 2.6838 1.8434
FVB/NJ f 3.92 0.2239 4.3607 3.4793
FVB/NJ m 3.7364 0.2135 4.1566 3.3162
NOD.CB17-Prkdcscid/J f 4.15 0.2239 4.5907 3.7093
NOD.CB17-Prkdcscid/J m 3.84 0.2239 4.2807 3.3993
NOD/ShiLtJ f 3.91 0.1583 4.2216 3.5984
NOD/ShiLtJ m 3.8048 0.1545 4.1089 3.5006


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 2.4863 0.1427 2.7671 2.2054
BALB/cByJ both 3.0154 0.108 3.228 2.8028
C3H/HeJ both 3.2636 0.1547 3.5681 2.9592
C57BL/6J both 2.9638 0.0881 3.1372 2.7904
CBA/J both 2.9639 0.1056 3.1717 2.7561
DBA/2J both 2.3727 0.151 2.6699 2.0756
FVB/NJ both 3.8282 0.1547 4.1326 3.5237
NOD.CB17-Prkdcscid/J both 3.995 0.1583 4.3066 3.6834
NOD/ShiLtJ both 3.8574 0.1106 4.0751 3.6397




  GWAS USING LINEAR MIXED MODELS