Project measure / variable:   Jaxpheno4   Retic16

ID, description, units MPD:22961   Retic16   reticulocyte count (Retic)   [n/L]  at age age 16wks  
Data set, strains Jaxpheno4   inbred   9 strains     sex: both     age: 16wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Jaxpheno4 - reticulocyte count (Retic) at age age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means326   n/L 326   n/L
Median of the strain means307   n/L 327   n/L
SD of the strain means± 52.0 ± 43.1
Coefficient of variation (CV)0.159 0.132
Min–max range of strain means270   –   408   n/L 261   –   392   n/L
Mean sample size per strain15.7   mice 15.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.6049 4.6049 0.0009 0.9759
strain 8 476145.8456 59518.2307 11.8245 < 0.0001
sex:strain 8 43878.5252 5484.8157 1.0897 0.3703
Residuals 286 1439574.0637 5033.4757


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 270.0 84.9   16 21.2 0.315 149.0, 466.0 -1.08
B6D2F1/J m 287.0 55.0   10 17.4 0.192 213.0, 402.0 -0.89
BALB/cByJ f 307.0 42.0   21 9.16 0.137 233.0, 386.0 -0.37
BALB/cByJ m 327.0 33.2   22 7.07 0.101 239.0, 394.0 0.03
C3H/HeJ f 285.0 63.2   10 20.0 0.222 174.0, 337.0 -0.79
C3H/HeJ m 327.0 23.1   11 6.96 0.0705 293.0, 376.0 0.03
C57BL/6J f 336.0 47.6   35 8.05 0.142 243.0, 450.0 0.19
C57BL/6J m 303.0 46.0   30 8.4 0.152 232.0, 474.0 -0.52
CBA/J f 288.0 69.8   22 14.9 0.242 172.0, 447.0 -0.73
CBA/J m 298.0 45.5   23 9.49 0.153 226.0, 407.0 -0.64
DBA/2J f 280.0 117.0   11 35.4 0.418 135.0, 497.0 -0.89
DBA/2J m 261.0 46.0   11 13.9 0.176 158.0, 326.0 -1.5
FVB/NJ f 377.0 86.5   10 27.4 0.23 166.0, 507.0 0.98
FVB/NJ m 364.0 48.5   11 14.6 0.133 284.0, 413.0 0.89
NOD.CB17-Prkdcscid/J f 408.0 62.8   10 19.9 0.154 317.0, 512.0 1.57
NOD.CB17-Prkdcscid/J m 371.0 31.4   10 9.94 0.0846 333.0, 435.0 1.05
NOD/ShiLtJ f 385.0 113.0   20 25.4 0.295 1.13
NOD/ShiLtJ m 392.0 138.0   21 30.1 0.351 1.54


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 269.8125 17.7367 304.7236 234.9014
B6D2F1/J m 286.6 22.4354 330.7595 242.4405
BALB/cByJ f 307.2381 15.4819 337.711 276.7652
BALB/cByJ m 327.2273 15.1259 356.9996 297.455
C3H/HeJ f 284.8 22.4354 328.9595 240.6405
C3H/HeJ m 327.1818 21.3913 369.2862 285.0774
C57BL/6J f 335.6286 11.9922 359.2328 312.0243
C57BL/6J m 302.6 12.9531 328.0955 277.1045
CBA/J f 288.3636 15.1259 318.1359 258.5913
CBA/J m 297.9565 14.7935 327.0744 268.8386
DBA/2J f 280.4545 21.3913 322.5589 238.3501
DBA/2J m 261.1818 21.3913 303.2862 219.0774
FVB/NJ f 376.7 22.4354 420.8595 332.5405
FVB/NJ m 364.2727 21.3913 406.3771 322.1683
NOD.CB17-Prkdcscid/J f 408.1 22.4354 452.2595 363.9405
NOD.CB17-Prkdcscid/J m 371.4 22.4354 415.5595 327.2405
NOD/ShiLtJ f 385.0 15.8642 416.2255 353.7745
NOD/ShiLtJ m 392.381 15.4819 422.8539 361.908


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 278.2063 14.2998 306.3525 250.06
BALB/cByJ both 317.2327 10.8222 338.534 295.9313
C3H/HeJ both 305.9909 15.4995 336.4984 275.4834
C57BL/6J both 319.1143 8.826 336.4865 301.742
CBA/J both 293.1601 10.5788 313.9822 272.338
DBA/2J both 270.8182 15.1259 300.5905 241.0459
FVB/NJ both 370.4864 15.4995 400.9939 339.9788
NOD.CB17-Prkdcscid/J both 389.75 15.8642 420.9755 358.5245
NOD/ShiLtJ both 388.6905 11.0834 410.5058 366.8752




  GWAS USING LINEAR MIXED MODELS