Project measure / variable:   Jaxpheno4   Retic8

ID, description, units MPD:22960   Retic8   reticulocyte count (Retic)   [n/L]  at age age 8wks  
Data set, strains Jaxpheno4   inbred   11 strains     sex: both     age: 8wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Jaxpheno4 - reticulocyte count (Retic) at age age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means359   n/L 350   n/L
Median of the strain means337   n/L 325   n/L
SD of the strain means± 54.7 ± 50.1
Coefficient of variation (CV)0.152 0.143
Min–max range of strain means296   –   444   n/L 294   –   421   n/L
Mean sample size per strain17.0   mice 17.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2696.1128 2696.1128 0.6087 0.4358
strain 10 906668.9091 90666.8909 20.469 < 0.0001
sex:strain 10 132860.4278 13286.0428 2.9995 0.0012
Residuals 386 1709775.1093 4429.4692


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 320.0 36.0   10 11.4 0.113 266.0, 376.0 -0.71
B6.129P2-Apoetm1Unc/J m 373.0 34.5   10 10.9 0.0926 323.0, 428.0 0.45
B6D2F1/J f 349.0 142.0   10 45.0 0.408 146.0, 529.0 -0.18
B6D2F1/J m 310.0 34.6   12 9.98 0.112 263.0, 392.0 -0.81
BALB/cByJ f 320.0 66.0   21 14.4 0.206 181.0, 433.0 -0.71
BALB/cByJ m 313.0 31.7   20 7.09 0.101 262.0, 364.0 -0.75
BALB/cJ f 336.0 64.8   22 13.8 0.193 220.0, 431.0 -0.41
BALB/cJ m 300.0 63.1   21 13.8 0.21 218.0, 531.0 -1.01
C3H/HeJ f 337.0 89.1   13 24.7 0.264 244.0, 539.0 -0.4
C3H/HeJ m 406.0 26.3   11 7.93 0.0648 374.0, 452.0 1.11
C57BL/6J f 388.0 63.8   42 9.84 0.164 262.0, 516.0 0.54
C57BL/6J m 401.0 49.9   34 8.56 0.124 329.0, 525.0 1.01
CBA/J f 296.0 87.8   21 19.2 0.297 92.6, 439.0 -1.15
CBA/J m 294.0 33.9   23 7.08 0.115 216.0, 363.0 -1.12
DBA/2J f 297.0 147.0   23 30.6 0.493 118.0, 615.0 -1.13
DBA/2J m 308.0 50.4   20 11.3 0.164 223.0, 396.0 -0.85
FVB/NJ f 434.0 30.4   11 9.18 0.0702 368.0, 464.0 1.38
FVB/NJ m 403.0 46.9   14 12.5 0.116 336.0, 478.0 1.05
NOD.CB17-Prkdcscid/J f 424.0 40.2   11 12.1 0.0947 383.0, 497.0 1.2
NOD.CB17-Prkdcscid/J m 325.0 24.5   12 7.08 0.0753 286.0, 369.0 -0.51
NOD/ShiLtJ f 444.0 62.5   21 13.6 0.141 297.0, 584.0 1.56
NOD/ShiLtJ m 421.0 33.4   26 6.55 0.0793 346.0, 489.0 1.41


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 320.0 21.0463 361.3797 278.6203
B6.129P2-Apoetm1Unc/J m 373.2 21.0463 414.5797 331.8203
B6D2F1/J f 349.3 21.0463 390.6797 307.9203
B6D2F1/J m 309.6667 19.2126 347.441 271.8923
BALB/cByJ f 319.7619 14.5233 348.3166 291.2072
BALB/cByJ m 313.2 14.882 342.4599 283.9401
BALB/cJ f 336.2273 14.1894 364.1255 308.3291
BALB/cJ m 300.4762 14.5233 329.0309 271.9215
C3H/HeJ f 337.4615 18.4588 373.754 301.1691
C3H/HeJ m 405.6364 20.0669 445.0904 366.1823
C57BL/6J f 387.7619 10.2695 407.9532 367.5707
C57BL/6J m 400.8235 11.414 423.2648 378.3822
CBA/J f 295.8857 14.5233 324.4405 267.331
CBA/J m 294.087 13.8775 321.372 266.802
DBA/2J f 296.9565 13.8775 324.2415 269.6715
DBA/2J m 307.95 14.882 337.2099 278.6901
FVB/NJ f 433.8182 20.0669 473.2722 394.3641
FVB/NJ m 402.9286 17.7874 437.9008 367.9563
NOD.CB17-Prkdcscid/J f 424.4545 20.0669 463.9086 385.0005
NOD.CB17-Prkdcscid/J m 325.4167 19.2126 363.191 287.6423
NOD/ShiLtJ f 443.619 14.5233 472.1738 415.0643
NOD/ShiLtJ m 420.7308 13.0524 446.3934 395.0681


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 346.6 14.882 375.8599 317.3401
B6D2F1/J both 329.4833 14.2484 357.4976 301.4691
BALB/cByJ both 316.481 10.3971 336.923 296.0389
BALB/cJ both 318.3517 10.1522 338.3122 298.3912
C3H/HeJ both 371.549 13.6327 398.3527 344.7452
C57BL/6J both 394.2927 7.6769 409.3866 379.1989
CBA/J both 294.9863 10.0438 314.7338 275.2389
DBA/2J both 302.4533 10.1742 322.4571 282.4494
FVB/NJ both 418.3734 13.4077 444.7347 392.012
NOD.CB17-Prkdcscid/J both 374.9356 13.8907 402.2464 347.6248
NOD/ShiLtJ both 432.1749 9.7633 451.3709 412.9789




  GWAS USING LINEAR MIXED MODELS