Project measure / variable:   Jaxpheno4   PLT16

ID, description, units MPD:22951   PLT16   platelet count (PLT; units per volume x 103)   [n/µL]  at age age 16wks  
Data set, strains Jaxpheno4   inbred   9 strains     sex: both     age: 16wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Jaxpheno4 - platelet count (PLT; units per volume x 103) at age age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means1031   n/µL 1123   n/µL
Median of the strain means1018   n/µL 1198   n/µL
SD of the strain means± 86.1 ± 185
Coefficient of variation (CV)0.0835 0.164
Min–max range of strain means907   –   1190   n/µL 829   –   1385   n/µL
Mean sample size per strain15.7   mice 15.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1101838.2947 1101838.2947 31.9997 < 0.0001
strain 8 3749225.4157 468653.177 13.6107 < 0.0001
sex:strain 8 861217.6097 107652.2012 3.1264 0.0021
Residuals 286 9847773.8378 34432.7757


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 1009.0 249.0   16 62.2 0.247 441.0, 1373.0 -0.25
B6D2F1/J m 1034.0 353.0   10 112.0 0.341 204.0, 1540.0 -0.48
BALB/cByJ f 927.0 124.0   21 27.0 0.133 622.0, 1095.0 -1.2
BALB/cByJ m 1005.0 159.0   22 34.0 0.159 566.0, 1256.0 -0.64
C3H/HeJ f 907.0 174.0   10 54.9 0.191 663.0, 1211.0 -1.44
C3H/HeJ m 829.0 273.0   11 82.4 0.33 359.0, 1229.0 -1.59
C57BL/6J f 1085.0 86.0   35 14.5 0.0792 924.0, 1279.0 0.63
C57BL/6J m 1310.0 179.0   30 32.6 0.136 749.0, 1638.0 1.01
CBA/J f 1018.0 106.0   22 22.6 0.104 842.0, 1267.0 -0.15
CBA/J m 1198.0 152.0   23 31.7 0.127 768.0, 1386.0 0.4
DBA/2J f 1034.0 124.0   11 37.4 0.12 810.0, 1169.0 0.04
DBA/2J m 925.0 163.0   11 49.3 0.177 759.0, 1266.0 -1.07
FVB/NJ f 1190.0 187.0   10 59.0 0.157 899.0, 1440.0 1.85
FVB/NJ m 1385.0 145.0   11 43.7 0.105 1113.0, 1576.0 1.42
NOD.CB17-Prkdcscid/J f 1093.0 201.0   10 63.7 0.184 885.0, 1496.0 0.73
NOD.CB17-Prkdcscid/J m 1227.0 215.0   10 68.0 0.175 811.0, 1510.0 0.56
NOD/ShiLtJ f 1012.0 225.0   20 50.4 0.223 330.0, 1313.0 -0.22
NOD/ShiLtJ m 1198.0 258.0   21 56.3 0.215 760.0, 1634.0 0.4


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 1008.9375 46.3902 1100.247 917.628
B6D2F1/J m 1034.5 58.6794 1149.9984 919.0016
BALB/cByJ f 927.0952 40.4927 1006.7967 847.3938
BALB/cByJ m 1005.0909 39.5617 1082.9599 927.2219
C3H/HeJ f 907.4 58.6794 1022.8984 791.9016
C3H/HeJ m 829.0909 55.9487 939.2143 718.9675
C57BL/6J f 1085.1714 31.3655 1146.9079 1023.435
C57BL/6J m 1309.8 33.8786 1376.483 1243.117
CBA/J f 1017.7727 39.5617 1095.6417 939.9037
CBA/J m 1197.913 38.6921 1274.0704 1121.7557
DBA/2J f 1034.4545 55.9487 1144.5779 924.3312
DBA/2J m 925.4545 55.9487 1035.5779 815.3312
FVB/NJ f 1190.0 58.6794 1305.4984 1074.5016
FVB/NJ m 1385.3636 55.9487 1495.487 1275.2403
NOD.CB17-Prkdcscid/J f 1092.9 58.6794 1208.3984 977.4016
NOD.CB17-Prkdcscid/J m 1226.8 58.6794 1342.2984 1111.3016
NOD/ShiLtJ f 1011.65 41.4926 1093.3197 929.9803
NOD/ShiLtJ m 1198.0476 40.4927 1277.7491 1118.3462


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 1021.7187 37.401 1095.3348 948.1027
BALB/cByJ both 966.0931 28.3054 1021.8064 910.3798
C3H/HeJ both 868.2455 40.5387 948.0374 788.4535
C57BL/6J both 1197.4857 23.0844 1242.9225 1152.0489
CBA/J both 1107.8429 27.6686 1162.3028 1053.383
DBA/2J both 979.9545 39.5617 1057.8235 902.0856
FVB/NJ both 1287.6818 40.5387 1367.4738 1207.8899
NOD.CB17-Prkdcscid/J both 1159.85 41.4926 1241.5197 1078.1803
NOD/ShiLtJ both 1104.8488 28.9883 1161.9064 1047.7913




  GWAS USING LINEAR MIXED MODELS