Project measure / variable:   Jaxpheno4   pct_BASO8

ID, description, units MPD:22938   pct_BASO8   basophil differential (BASO; percentage of total WBC)   [%]  at age 8wks  
Data set, strains Jaxpheno4   inbred   11 strains     sex: both     age: 8wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Jaxpheno4 - basophil differential (BASO; percentage of total WBC) at age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means0.283   % 0.359   %
Median of the strain means0.252   % 0.350   %
SD of the strain means± 0.154 ± 0.180
Coefficient of variation (CV)0.544 0.501
Min–max range of strain means0.162   –   0.727   % 0.109   –   0.805   %
Mean sample size per strain17.0   mice 17.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.0825 1.0825 20.8399 < 0.0001
strain 10 4.9321 0.4932 9.4949 < 0.0001
sex:strain 10 4.0896 0.409 7.873 < 0.0001
Residuals 386 20.0507 0.0519


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 0.32 0.114   10 0.0359 0.355 0.2, 0.5 0.24
B6.129P2-Apoetm1Unc/J m 0.45 0.357   10 0.113 0.793 0.1, 1.3 0.5
B6D2F1/J f 0.29 0.137   10 0.0433 0.473 0.1, 0.5 0.05
B6D2F1/J m 0.283 0.199   12 0.0575 0.703 -0.42
BALB/cByJ f 0.21 0.0995   21 0.0217 0.475 -0.47
BALB/cByJ m 0.35 0.242   20 0.054 0.691 0.1, 1.1 -0.05
BALB/cJ f 0.205 0.095   22 0.0203 0.464 0.1, 0.4 -0.5
BALB/cJ m 0.805 0.574   21 0.125 0.713 0.2, 2.4 2.48
C3H/HeJ f 0.162 0.087   13 0.0241 0.538 -0.78
C3H/HeJ m 0.109 0.0831   11 0.0251 0.762 -1.39
C57BL/6J f 0.212 0.129   42 0.0199 0.61 -0.46
C57BL/6J m 0.203 0.119   34 0.0205 0.588 -0.87
CBA/J f 0.214 0.139   21 0.0303 0.648 -0.45
CBA/J m 0.317 0.227   23 0.0473 0.715 -0.23
DBA/2J f 0.252 0.0994   23 0.0207 0.394 0.1, 0.5 -0.2
DBA/2J m 0.4 0.258   20 0.0576 0.644 0.1, 1.0 0.23
FVB/NJ f 0.255 0.175   11 0.0529 0.689 0.1, 0.7 -0.18
FVB/NJ m 0.243 0.191   14 0.051 0.786 -0.65
NOD.CB17-Prkdcscid/J f 0.727 0.415   11 0.125 0.571 2.89
NOD.CB17-Prkdcscid/J m 0.442 0.38   12 0.11 0.861 0.2, 1.2 0.46
NOD/ShiLtJ f 0.262 0.175   21 0.0381 0.667 0.1, 0.6 -0.13
NOD/ShiLtJ m 0.35 0.208   26 0.0409 0.595 0.1, 0.9 -0.05


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 0.32 0.0721 0.4617 0.1783
B6.129P2-Apoetm1Unc/J m 0.45 0.0721 0.5917 0.3083
B6D2F1/J f 0.29 0.0721 0.4317 0.1483
B6D2F1/J m 0.2833 0.0658 0.4127 0.154
BALB/cByJ f 0.2095 0.0497 0.3073 0.1117
BALB/cByJ m 0.35 0.051 0.4502 0.2498
BALB/cJ f 0.2045 0.0486 0.3001 0.109
BALB/cJ m 0.8048 0.0497 0.9025 0.707
C3H/HeJ f 0.1615 0.0632 0.2858 0.0373
C3H/HeJ m 0.1091 0.0687 0.2442 0.0
C57BL/6J f 0.2119 0.0352 0.281 0.1428
C57BL/6J m 0.2029 0.0391 0.2798 0.1261
CBA/J f 0.2143 0.0497 0.3121 0.1165
CBA/J m 0.3174 0.0475 0.4108 0.224
DBA/2J f 0.2522 0.0475 0.3456 0.1587
DBA/2J m 0.4 0.051 0.5002 0.2998
FVB/NJ f 0.2545 0.0687 0.3897 0.1194
FVB/NJ m 0.2429 0.0609 0.3626 0.1231
NOD.CB17-Prkdcscid/J f 0.7273 0.0687 0.8624 0.5922
NOD.CB17-Prkdcscid/J m 0.4417 0.0658 0.571 0.3123
NOD/ShiLtJ f 0.2619 0.0497 0.3597 0.1641
NOD/ShiLtJ m 0.35 0.0447 0.4379 0.2621


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 0.385 0.051 0.4852 0.2848
B6D2F1/J both 0.2867 0.0488 0.3826 0.1907
BALB/cByJ both 0.2798 0.0356 0.3498 0.2098
BALB/cJ both 0.5047 0.0348 0.573 0.4363
C3H/HeJ both 0.1353 0.0467 0.2271 0.0435
C57BL/6J both 0.2074 0.0263 0.2591 0.1557
CBA/J both 0.2658 0.0344 0.3335 0.1982
DBA/2J both 0.3261 0.0348 0.3946 0.2576
FVB/NJ both 0.2487 0.0459 0.339 0.1584
NOD.CB17-Prkdcscid/J both 0.5845 0.0476 0.678 0.4909
NOD/ShiLtJ both 0.306 0.0334 0.3717 0.2402




  GWAS USING LINEAR MIXED MODELS