Project measure / variable:   Jaxpheno4   pct_LYMPH16

ID, description, units MPD:22933   pct_LYMPH16   lymphocyte differential (LYM; percentage of total WBC)   [%]  at age 16wks  
Data set, strains Jaxpheno4   inbred   9 strains     sex: both     age: 16wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Jaxpheno4 - lymphocyte differential (LYM; percentage of total WBC) at age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means70.8   % 64.3   %
Median of the strain means73.3   % 68.2   %
SD of the strain means± 16.9 ± 13.7
Coefficient of variation (CV)0.238 0.213
Min–max range of strain means30.2   –   86.6   % 35.3   –   79.8   %
Mean sample size per strain15.7   mice 15.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 5953.3619 5953.3619 55.8751 < 0.0001
strain 8 36516.1619 4564.5202 42.8401 < 0.0001
sex:strain 8 9907.1711 1238.3964 11.6229 < 0.0001
Residuals 286 30472.653 106.5477


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 83.8 2.59   16 0.647 0.0309 78.1, 88.1 0.77
B6D2F1/J m 79.8 4.71   10 1.49 0.059 72.2, 88.0 1.13
BALB/cByJ f 72.9 6.17   21 1.35 0.0846 57.5, 80.5 0.13
BALB/cByJ m 70.4 5.13   22 1.09 0.0729 59.6, 78.2 0.45
C3H/HeJ f 67.2 3.07   10 0.969 0.0456 62.9, 71.9 -0.21
C3H/HeJ m 68.2 4.34   11 1.31 0.0637 62.0, 75.4 0.29
C57BL/6J f 86.6 4.79   35 0.81 0.0553 70.4, 93.0 0.94
C57BL/6J m 61.6 24.4   30 4.46 0.396 18.9, 92.6 -0.2
CBA/J f 73.3 9.56   22 2.04 0.13 39.3, 83.4 0.15
CBA/J m 74.6 5.38   23 1.12 0.0721 60.8, 85.8 0.75
DBA/2J f 75.9 4.13   11 1.24 0.0544 67.6, 81.8 0.3
DBA/2J m 75.3 3.21   11 0.968 0.0427 70.0, 79.6 0.8
FVB/NJ f 82.0 6.16   10 1.95 0.0751 65.2, 87.2 0.67
FVB/NJ m 53.5 17.2   11 5.19 0.321 35.4, 78.1 -0.79
NOD.CB17-Prkdcscid/J f 30.2 8.61   10 2.72 0.285 15.8, 48.3 -2.41
NOD.CB17-Prkdcscid/J m 35.3 9.1   10 2.88 0.258 23.4, 56.2 -2.11
NOD/ShiLtJ f 65.1 9.08   20 2.03 0.139 37.3, 77.3 -0.34
NOD/ShiLtJ m 59.8 8.37   21 1.83 0.14 39.9, 75.2 -0.33


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 83.8312 2.5805 88.9105 78.752
B6D2F1/J m 79.78 3.2642 86.2048 73.3552
BALB/cByJ f 72.9 2.2525 77.3336 68.4664
BALB/cByJ m 70.4045 2.2007 74.7362 66.0729
C3H/HeJ f 67.25 3.2642 73.6748 60.8252
C3H/HeJ m 68.1818 3.1123 74.3077 62.056
C57BL/6J f 86.6286 1.7448 90.0628 83.1944
C57BL/6J m 61.64 1.8846 65.3494 57.9306
CBA/J f 73.2955 2.2007 77.6271 68.9638
CBA/J m 74.5826 2.1523 78.819 70.3462
DBA/2J f 75.9091 3.1123 82.0349 69.7833
DBA/2J m 75.2545 3.1123 81.3804 69.1287
FVB/NJ f 82.04 3.2642 88.4648 75.6152
FVB/NJ m 53.5 3.1123 59.6258 47.3742
NOD.CB17-Prkdcscid/J f 30.22 3.2642 36.6448 23.7952
NOD.CB17-Prkdcscid/J m 35.31 3.2642 41.7348 28.8852
NOD/ShiLtJ f 65.125 2.3081 69.668 60.582
NOD/ShiLtJ m 59.8286 2.2525 64.2621 55.395


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 81.8056 2.0805 85.9007 77.7106
BALB/cByJ both 71.6523 1.5745 74.7514 68.5531
C3H/HeJ both 67.7159 2.255 72.1545 63.2773
C57BL/6J both 74.1343 1.2841 76.6618 71.6068
CBA/J both 73.939 1.5391 76.9685 70.9096
DBA/2J both 75.5818 2.2007 79.9134 71.2502
FVB/NJ both 67.77 2.255 72.2086 63.3314
NOD.CB17-Prkdcscid/J both 32.765 2.3081 37.308 28.222
NOD/ShiLtJ both 62.4768 1.6125 65.6507 59.3028




  GWAS USING LINEAR MIXED MODELS