Project measure / variable:   Jaxpheno4   pct_NEUT16

ID, description, units MPD:22931   pct_NEUT16   neutrophil differential (NEUT; percentage of total WBC)   [%]  at age 16wks  
Data set, strains Jaxpheno4   inbred   9 strains     sex: both     age: 16wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Jaxpheno4 - neutrophil differential (NEUT; percentage of total WBC) at age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means22.0   % 29.3   %
Median of the strain means21.8   % 24.8   %
SD of the strain means± 12.7 ± 11.7
Coefficient of variation (CV)0.577 0.398
Min–max range of strain means8.33   –   50.2   % 15.5   –   51.8   %
Mean sample size per strain15.7   mice 15.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 6617.8573 6617.8573 64.4716 < 0.0001
strain 8 21464.4617 2683.0577 26.1385 < 0.0001
sex:strain 8 9601.3243 1200.1655 11.6921 < 0.0001
Residuals 286 29357.233 102.6477


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 10.7 2.19   16 0.548 0.204 8.2, 16.0 -0.89
B6D2F1/J m 15.5 5.07   10 1.6 0.328 8.9, 23.7 -1.18
BALB/cByJ f 22.2 5.92   21 1.29 0.267 15.3, 38.3 0.02
BALB/cByJ m 24.3 5.02   22 1.07 0.206 16.7, 35.8 -0.43
C3H/HeJ f 26.4 3.07   10 0.971 0.116 21.7, 30.5 0.35
C3H/HeJ m 24.8 4.11   11 1.24 0.166 18.7, 30.9 -0.39
C57BL/6J f 8.33 4.16   35 0.703 0.5 4.3, 23.9 -1.08
C57BL/6J m 33.9 23.8   30 4.34 0.701 4.6, 77.7 0.39
CBA/J f 21.8 9.84   22 2.1 0.451 12.4, 57.4 -0.01
CBA/J m 20.2 5.43   23 1.13 0.269 9.6, 33.5 -0.78
DBA/2J f 18.0 4.05   11 1.22 0.225 12.9, 26.8 -0.31
DBA/2J m 19.1 2.9   11 0.874 0.152 14.7, 23.8 -0.87
FVB/NJ f 11.9 5.12   10 1.62 0.431 5.4, 25.0 -0.79
FVB/NJ m 40.2 16.3   11 4.93 0.407 16.3, 58.4 0.93
NOD.CB17-Prkdcscid/J f 50.2 10.4   10 3.29 0.207 32.9, 66.5 2.23
NOD.CB17-Prkdcscid/J m 51.8 10.1   10 3.2 0.195 28.4, 64.2 1.93
NOD/ShiLtJ f 28.2 9.48   20 2.12 0.336 15.6, 55.7 0.49
NOD/ShiLtJ m 34.0 7.55   21 1.65 0.222 21.6, 53.8 0.4


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 10.7125 2.5329 15.6979 5.7271
B6D2F1/J m 15.47 3.2039 21.7762 9.1638
BALB/cByJ f 22.1714 2.2109 26.5231 17.8198
BALB/cByJ m 24.3045 2.16 28.5562 20.0529
C3H/HeJ f 26.41 3.2039 32.7162 20.1038
C3H/HeJ m 24.7909 3.0548 30.8036 18.7782
C57BL/6J f 8.3257 1.7125 11.6965 4.9549
C57BL/6J m 33.93 1.8498 37.5709 30.2891
CBA/J f 21.8273 2.16 26.0789 17.5757
CBA/J m 20.2174 2.1126 24.3755 16.0592
DBA/2J f 18.0 3.0548 24.0127 11.9873
DBA/2J m 19.0545 3.0548 25.0672 13.0419
FVB/NJ f 11.88 3.2039 18.1862 5.5738
FVB/NJ m 40.1818 3.0548 46.1945 34.1691
NOD.CB17-Prkdcscid/J f 50.18 3.2039 56.4862 43.8738
NOD.CB17-Prkdcscid/J m 51.8 3.2039 58.1062 45.4938
NOD/ShiLtJ f 28.195 2.2655 32.6541 23.7359
NOD/ShiLtJ m 33.9524 2.2109 38.304 29.6007


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 13.0913 2.0421 17.1106 9.0719
BALB/cByJ both 23.238 1.5455 26.2799 20.1961
C3H/HeJ both 25.6005 2.2134 29.9571 21.2439
C57BL/6J both 21.1279 1.2604 23.6087 18.647
CBA/J both 21.0223 1.5107 23.9958 18.0488
DBA/2J both 18.5273 2.16 22.7789 14.2757
FVB/NJ both 26.0309 2.2134 30.3875 21.6743
NOD.CB17-Prkdcscid/J both 50.99 2.2655 55.4491 46.5309
NOD/ShiLtJ both 31.0737 1.5827 34.189 27.9584




  GWAS USING LINEAR MIXED MODELS