Project measure / variable:   Jaxpheno4   BASO16

ID, description, units MPD:22919   BASO16   basophil count (BASO; units per volume x 103)   [n/µL]  at age 16wks  
Data set, strains Jaxpheno4   inbred   9 strains     sex: both     age: 16wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Jaxpheno4 - basophil count (BASO; units per volume x 103) at age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means0.00895   n/µL 0.00844   n/µL
Median of the strain means0.00682   n/µL 0.00600   n/µL
SD of the strain means± 0.00569 ± 0.00569
Coefficient of variation (CV)0.635 0.674
Min–max range of strain means0.00100   –   0.0173   n/µL 0.00100   –   0.0191   n/µL
Mean sample size per strain15.7   mice 15.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0 0.0 0.006 0.9384
strain 8 0.0071 0.0009 16.6298 < 0.0001
sex:strain 8 0.0005 0.0001 1.2021 0.2975
Residuals 286 0.0153 0.0001


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 0.00625 0.00719   16 0.0018 1.15 -0.47
B6D2F1/J m 0.006 0.00699   10 0.00221 1.17 -0.43
BALB/cByJ f 0.0171 0.0106   21 0.0023 0.616 1.43
BALB/cByJ m 0.0155 0.00858   22 0.00183 0.555 1.24
C3H/HeJ f 0.013 0.00483   10 0.00153 0.372 0.01, 0.02 0.71
C3H/HeJ m 0.0191 0.0138   11 0.00415 0.72 1.87
C57BL/6J f 0.00457 0.00505   35 0.000854 1.11 -0.77
C57BL/6J m 0.00533 0.00507   30 0.000926 0.951 -0.55
CBA/J f 0.00682 0.00646   22 0.00138 0.948 -0.37
CBA/J m 0.00696 0.00765   23 0.00159 1.1 -0.26
DBA/2J f 0.0173 0.00647   11 0.00195 0.374 0.01, 0.03 1.47
DBA/2J m 0.0109 0.00302   11 0.000909 0.276 0.01, 0.02 0.43
FVB/NJ f 0.009 0.00568   10 0.0018 0.631 0.01
FVB/NJ m 0.00545 0.00522   11 0.00157 0.957 -0.53
NOD.CB17-Prkdcscid/J f 0.001 0.00316   10 0.001 3.16 -1.4
NOD.CB17-Prkdcscid/J m 0.001 0.00316   10 0.001 3.16 -1.31
NOD/ShiLtJ f 0.0055 0.00826   20 0.00185 1.5 -0.61
NOD/ShiLtJ m 0.00571 0.00978   21 0.00213 1.71 -0.48


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 0.0063 0.0018 0.0099 0.0026
B6D2F1/J m 0.006 0.0023 0.0106 0.0014
BALB/cByJ f 0.0171 0.0016 0.0203 0.014
BALB/cByJ m 0.0155 0.0016 0.0185 0.0124
C3H/HeJ f 0.013 0.0023 0.0176 0.0084
C3H/HeJ m 0.0191 0.0022 0.0234 0.0147
C57BL/6J f 0.0046 0.0012 0.007 0.0021
C57BL/6J m 0.0053 0.0013 0.008 0.0027
CBA/J f 0.0068 0.0016 0.0099 0.0037
CBA/J m 0.007 0.0015 0.01 0.004
DBA/2J f 0.0173 0.0022 0.0216 0.0129
DBA/2J m 0.0109 0.0022 0.0153 0.0066
FVB/NJ f 0.009 0.0023 0.0136 0.0044
FVB/NJ m 0.0055 0.0022 0.0098 0.0011
NOD.CB17-Prkdcscid/J f 0.001 0.0023 0.0056 0.0
NOD.CB17-Prkdcscid/J m 0.001 0.0023 0.0056 0.0
NOD/ShiLtJ f 0.0055 0.0016 0.0087 0.0023
NOD/ShiLtJ m 0.0057 0.0016 0.0089 0.0026


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 0.0061 0.0015 0.009 0.0032
BALB/cByJ both 0.0163 0.0011 0.0185 0.0141
C3H/HeJ both 0.016 0.0016 0.0192 0.0129
C57BL/6J both 0.005 0.0009 0.0067 0.0032
CBA/J both 0.0069 0.0011 0.009 0.0047
DBA/2J both 0.0141 0.0016 0.0172 0.011
FVB/NJ both 0.0072 0.0016 0.0104 0.0041
NOD.CB17-Prkdcscid/J both 0.001 0.0016 0.0042 0.0
NOD/ShiLtJ both 0.0056 0.0011 0.0079 0.0034




  GWAS USING LINEAR MIXED MODELS