Project measure / variable:   Jaxpheno4   LYMPH16

ID, description, units MPD:22913   LYMPH16   lymphocyte count (LYM; units per volume x 103)   [n/µL]  at age 16wks  
Data set, strains Jaxpheno4   inbred   9 strains     sex: both     age: 16wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Jaxpheno4 - lymphocyte count (LYM; units per volume x 103) at age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means1.89   n/µL 1.65   n/µL
Median of the strain means1.81   n/µL 1.80   n/µL
SD of the strain means± 0.804 ± 0.767
Coefficient of variation (CV)0.425 0.465
Min–max range of strain means0.231   –   3.08   n/µL 0.246   –   2.85   n/µL
Mean sample size per strain15.7   mice 15.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 9.2927 9.2927 16.4506 0.0001
strain 8 105.1165 13.1396 23.2605 < 0.0001
sex:strain 8 11.936 1.492 2.6412 0.0083
Residuals 286 161.5581 0.5649


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 2.16 1.12   16 0.279 0.517 1.03, 5.29 0.33
B6D2F1/J m 2.85 0.962   10 0.304 0.337 1.73, 4.83 1.57
BALB/cByJ f 2.58 0.939   21 0.205 0.363 1.49, 5.06 0.85
BALB/cByJ m 1.98 0.666   22 0.142 0.336 0.95, 3.23 0.43
C3H/HeJ f 1.62 0.434   10 0.137 0.268 1.14, 2.34 -0.34
C3H/HeJ m 1.92 0.683   11 0.206 0.355 1.04, 3.05 0.35
C57BL/6J f 2.32 1.16   35 0.196 0.501 1.0, 5.3 0.53
C57BL/6J m 1.8 0.842   30 0.154 0.467 0.74, 3.95 0.2
CBA/J f 1.81 0.415   22 0.0886 0.229 0.94, 2.71 -0.1
CBA/J m 1.51 0.624   23 0.13 0.413 0.62, 2.95 -0.18
DBA/2J f 3.08 0.664   11 0.2 0.216 2.31, 4.13 1.48
DBA/2J m 2.33 0.506   11 0.153 0.218 1.66, 3.21 0.89
FVB/NJ f 1.77 0.599   10 0.189 0.339 0.63, 2.6 -0.15
FVB/NJ m 1.13 0.522   11 0.157 0.46 0.68, 2.61 -0.68
NOD.CB17-Prkdcscid/J f 0.231 0.0692   10 0.0219 0.3 0.12, 0.33 -2.07
NOD.CB17-Prkdcscid/J m 0.246 0.0942   10 0.0298 0.383 0.14, 0.47 -1.83
NOD/ShiLtJ f 1.47 0.56   20 0.125 0.381 0.47, 2.9 -0.53
NOD/ShiLtJ m 1.07 0.433   21 0.0946 0.406 0.44, 1.97 -0.75


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 2.1612 0.1879 2.5311 1.7914
B6D2F1/J m 2.851 0.2377 3.3188 2.3832
BALB/cByJ f 2.5824 0.164 2.9052 2.2596
BALB/cByJ m 1.9809 0.1602 2.2963 1.6655
C3H/HeJ f 1.621 0.2377 2.0888 1.1532
C3H/HeJ m 1.9245 0.2266 2.3706 1.4785
C57BL/6J f 2.3169 0.127 2.5669 2.0668
C57BL/6J m 1.8037 0.1372 2.0738 1.5336
CBA/J f 1.8105 0.1602 2.1259 1.4951
CBA/J m 1.5122 0.1567 1.8206 1.2037
DBA/2J f 3.0773 0.2266 3.5233 2.6312
DBA/2J m 2.3255 0.2266 2.7715 1.8794
FVB/NJ f 1.767 0.2377 2.2348 1.2992
FVB/NJ m 1.1345 0.2266 1.5806 0.6885
NOD.CB17-Prkdcscid/J f 0.231 0.2377 0.6988 0.0
NOD.CB17-Prkdcscid/J m 0.246 0.2377 0.7138 0.0
NOD/ShiLtJ f 1.4705 0.1681 1.8013 1.1397
NOD/ShiLtJ m 1.0681 0.164 1.3909 0.7453


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 2.5061 0.1515 2.8043 2.208
BALB/cByJ both 2.2816 0.1146 2.5073 2.056
C3H/HeJ both 1.7728 0.1642 2.096 1.4496
C57BL/6J both 2.0603 0.0935 2.2443 1.8762
CBA/J both 1.6613 0.1121 1.8819 1.4407
DBA/2J both 2.7014 0.1602 3.0168 2.386
FVB/NJ both 1.4508 0.1642 1.774 1.1276
NOD.CB17-Prkdcscid/J both 0.2385 0.1681 0.5693 0.0
NOD/ShiLtJ both 1.2693 0.1174 1.5004 1.0382




  GWAS USING LINEAR MIXED MODELS