Project measure / variable:   Jaxpheno4   LYMPH8

ID, description, units MPD:22912   LYMPH8   lymphocyte count (LYM; units per volume x 103)   [n/µL]  at age 8wks  
Data set, strains Jaxpheno4   inbred   11 strains     sex: both     age: 8wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Jaxpheno4 - lymphocyte count (LYM; units per volume x 103) at age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means2.53   n/µL 1.79   n/µL
Median of the strain means2.61   n/µL 1.78   n/µL
SD of the strain means± 1.01 ± 0.681
Coefficient of variation (CV)0.399 0.381
Min–max range of strain means0.140   –   4.08   n/µL 0.174   –   2.57   n/µL
Mean sample size per strain17.0   mice 17.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 77.8543 77.8543 101.0706 < 0.0001
strain 10 208.5894 20.8589 27.0791 < 0.0001
sex:strain 10 15.9791 1.5979 2.0744 0.0256
Residuals 386 297.3341 0.7703


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 3.27 0.748   10 0.236 0.228 2.11, 4.3 0.73
B6.129P2-Apoetm1Unc/J m 2.53 0.547   10 0.173 0.216 1.76, 3.36 1.09
B6D2F1/J f 2.51 0.923   10 0.292 0.368 1.72, 4.87 -0.02
B6D2F1/J m 1.78 0.421   12 0.121 0.236 1.09, 2.68 -0.01
BALB/cByJ f 3.0 0.831   21 0.181 0.277 1.91, 4.89 0.46
BALB/cByJ m 1.74 0.334   20 0.0746 0.192 1.29, 2.34 -0.07
BALB/cJ f 2.61 0.527   22 0.112 0.202 1.89, 4.23 0.08
BALB/cJ m 2.14 1.43   21 0.312 0.667 0.52, 5.3 0.52
C3H/HeJ f 2.41 0.642   13 0.178 0.266 1.29, 3.43 -0.12
C3H/HeJ m 1.77 0.562   11 0.169 0.318 1.17, 2.79 -0.02
C57BL/6J f 3.08 1.31   42 0.202 0.425 1.58, 7.62 0.54
C57BL/6J m 1.98 0.838   34 0.144 0.423 0.8, 4.56 0.28
CBA/J f 2.03 0.791   21 0.173 0.39 1.09, 4.53 -0.5
CBA/J m 1.4 0.48   23 0.1 0.343 0.73, 2.36 -0.57
DBA/2J f 4.08 1.48   23 0.308 0.362 1.89, 6.47 1.53
DBA/2J m 2.57 0.905   20 0.202 0.352 1.48, 5.72 1.15
FVB/NJ f 2.96 0.975   11 0.294 0.33 1.91, 5.19 0.42
FVB/NJ m 2.31 0.655   14 0.175 0.283 1.42, 3.46 0.77
NOD.CB17-Prkdcscid/J f 0.14 0.0537   11 0.0162 0.383 0.06, 0.25 -2.37
NOD.CB17-Prkdcscid/J m 0.174 0.0489   12 0.0141 0.281 0.13, 0.29 -2.37
NOD/ShiLtJ f 1.77 0.792   21 0.173 0.446 0.79, 3.52 -0.75
NOD/ShiLtJ m 1.26 0.537   26 0.105 0.426 0.36, 2.28 -0.77


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 3.275 0.2775 3.8207 2.7293
B6.129P2-Apoetm1Unc/J m 2.533 0.2775 3.0787 1.9873
B6D2F1/J f 2.508 0.2775 3.0537 1.9623
B6D2F1/J m 1.7817 0.2534 2.2798 1.2835
BALB/cByJ f 3.001 0.1915 3.3775 2.6244
BALB/cByJ m 1.738 0.1963 2.1239 1.3521
BALB/cJ f 2.6132 0.1871 2.9811 2.2453
BALB/cJ m 2.1419 0.1915 2.5185 1.7653
C3H/HeJ f 2.4123 0.2434 2.8909 1.9337
C3H/HeJ m 1.77 0.2646 2.2903 1.2497
C57BL/6J f 3.081 0.1354 3.3472 2.8147
C57BL/6J m 1.9829 0.1505 2.2789 1.687
CBA/J f 2.0276 0.1915 2.4042 1.6511
CBA/J m 1.3996 0.183 1.7594 1.0398
DBA/2J f 4.0817 0.183 4.4416 3.7219
DBA/2J m 2.5725 0.1963 2.9584 2.1866
FVB/NJ f 2.9555 0.2646 3.4757 2.4352
FVB/NJ m 2.3129 0.2346 2.774 1.8517
NOD.CB17-Prkdcscid/J f 0.14 0.2646 0.6603 0.0
NOD.CB17-Prkdcscid/J m 0.1742 0.2534 0.6723 0.0
NOD/ShiLtJ f 1.7748 0.1915 2.1513 1.3982
NOD/ShiLtJ m 1.2592 0.1721 1.5976 0.9208


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 2.904 0.1963 3.2899 2.5181
B6D2F1/J both 2.1448 0.1879 2.5143 1.7754
BALB/cByJ both 2.3695 0.1371 2.6391 2.0999
BALB/cJ both 2.3775 0.1339 2.6408 2.1143
C3H/HeJ both 2.0912 0.1798 2.4446 1.7377
C57BL/6J both 2.5319 0.1012 2.731 2.3329
CBA/J both 1.7136 0.1324 1.974 1.4532
DBA/2J both 3.3271 0.1342 3.5909 3.0633
FVB/NJ both 2.6342 0.1768 2.9818 2.2865
NOD.CB17-Prkdcscid/J both 0.1571 0.1832 0.5172 0.0
NOD/ShiLtJ both 1.517 0.1288 1.7701 1.2639




  GWAS USING LINEAR MIXED MODELS