Project measure / variable:   Jaxpheno3   P16

ID, description, units MPD:22859   P16   phosphorus (plasma phosphate)   [mg/dL]  at age 16wks  
Data set, strains Jaxpheno3   inbred   8 strains     sex: both     age: 16wks
Procedure metabolic panel
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  STRAIN COMPARISON PLOT
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Jaxpheno3 - phosphorus (plasma phosphate) at age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means8.59   mg/dL 8.76   mg/dL
Median of the strain means8.82   mg/dL 8.79   mg/dL
SD of the strain means± 1.03 ± 0.709
Coefficient of variation (CV)0.120 0.0810
Min–max range of strain means7.11   –   10.0   mg/dL 7.73   –   9.82   mg/dL
Mean sample size per strain16.1   mice 16.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0314 0.0314 0.017 0.8963
strain 7 180.0741 25.7249 13.9357 < 0.0001
sex:strain 7 27.157 3.8796 2.1016 0.044
Residuals 244 450.4153 1.846


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 9.5 1.75   10 0.553 0.184 6.6, 11.4 0.88
B6D2F1/J m 9.24 1.29   10 0.407 0.139 7.8, 12.2 0.68
BALB/cByJ f 7.11 1.03   20 0.23 0.145 5.5, 9.0 -1.43
BALB/cByJ m 7.92 1.57   20 0.352 0.199 4.6, 10.4 -1.18
C3H/HeJ f 8.25 1.31   10 0.415 0.159 6.6, 10.3 -0.33
C3H/HeJ m 9.0 1.11   10 0.35 0.123 7.4, 10.6 0.34
C57BL/6J f 10.0 1.48   30 0.27 0.148 6.5, 12.2 1.37
C57BL/6J m 9.26 1.27   30 0.232 0.137 6.8, 11.5 0.71
CBA/J f 7.16 0.972   10 0.307 0.136 5.4, 8.5 -1.38
CBA/J m 7.73 1.62   20 0.362 0.21 5.8, 11.8 -1.45
DBA/2J f 8.74 1.6   10 0.508 0.184 5.6, 12.0 0.15
DBA/2J m 8.51 1.12   10 0.353 0.131 6.6, 10.0 -0.35
NOD.CB17-Prkdcscid/J f 8.9 1.21   10 0.382 0.136 7.5, 10.6 0.3
NOD.CB17-Prkdcscid/J m 8.59 0.964   10 0.305 0.112 6.7, 10.3 -0.24
NOD/ShiLtJ f 9.03 1.46   29 0.271 0.162 6.0, 12.0 0.43
NOD/ShiLtJ m 9.82 1.23   21 0.268 0.125 8.0, 13.1 1.5


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 9.5 0.4296 10.3463 8.6537
B6D2F1/J m 9.24 0.4296 10.0863 8.3937
BALB/cByJ f 7.115 0.3038 7.7134 6.5166
BALB/cByJ m 7.92 0.3038 8.5184 7.3216
C3H/HeJ f 8.25 0.4296 9.0963 7.4037
C3H/HeJ m 9.0 0.4296 9.8463 8.1537
C57BL/6J f 10.01 0.2481 10.4986 9.5214
C57BL/6J m 9.2567 0.2481 9.7453 8.7681
CBA/J f 7.16 0.4296 8.0063 6.3137
CBA/J m 7.73 0.3038 8.3284 7.1316
DBA/2J f 8.74 0.4296 9.5863 7.8937
DBA/2J m 8.51 0.4296 9.3563 7.6637
NOD.CB17-Prkdcscid/J f 8.9 0.4296 9.7463 8.0537
NOD.CB17-Prkdcscid/J m 8.59 0.4296 9.4363 7.7437
NOD/ShiLtJ f 9.031 0.2523 9.528 8.5341
NOD/ShiLtJ m 9.8238 0.2965 10.4078 9.2398


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 9.37 0.3038 9.9684 8.7716
BALB/cByJ both 7.5175 0.2148 7.9406 7.0944
C3H/HeJ both 8.625 0.3038 9.2234 8.0266
C57BL/6J both 9.6333 0.1754 9.9788 9.2878
CBA/J both 7.445 0.2631 7.9632 6.9268
DBA/2J both 8.625 0.3038 9.2234 8.0266
NOD.CB17-Prkdcscid/J both 8.745 0.3038 9.3434 8.1466
NOD/ShiLtJ both 9.4274 0.1947 9.8108 9.044




  GWAS USING LINEAR MIXED MODELS