Phenotype measure:   Jaxpheno3   Ca8

ID, description, units MPD:22850   Ca8   calcium (plasma Ca)   [mg/dL]  at age 8wks
Data set, strains Jaxpheno3   inbred   11 strains     sex: both     age: 8wks
Procedure metabolic panel
Ontology mappings


  STRAIN COMPARISON PLOT
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Jaxpheno3 - calcium (plasma Ca) at age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means10.4   mg/dL 10.4   mg/dL
Median of the strain means10.3   mg/dL 10.5   mg/dL
SD of the strain means± 0.383 ± 0.463
Coefficient of variation (CV)0.0369 0.0444
Min–max range of strain means9.77   –   11.0   mg/dL 9.49   –   11.2   mg/dL
Mean sample size per strain15.8   mice 17.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0632 0.0632 0.2182 0.6407
strain 10 38.2499 3.825 13.2111 < 0.0001
sex:strain 10 18.1271 1.8127 6.2609 < 0.0001
Residuals 378 109.4417 0.2895


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 10.2 0.19   10 0.06 0.0185 10.0, 10.6 -0.44
B6.129P2-Apoetm1Unc/J m 10.2 0.16   10 0.0504 0.0156 9.9, 10.4 -0.48
B6D2F1/J f 11.0 0.542   10 0.171 0.0495 10.3, 11.7 1.65
B6D2F1/J m 11.2 0.17   10 0.0537 0.0152 11.0, 11.6 1.68
BALB/cByJ f 10.2 0.455   20 0.102 0.0448 9.5, 11.1 -0.44
BALB/cByJ m 9.86 0.404   20 0.0904 0.041 9.3, 10.5 -1.22
BALB/cJ f 10.2 0.353   20 0.0789 0.0347 9.6, 10.8 -0.44
BALB/cJ m 9.49 0.384   22 0.0819 0.0405 9.0, 10.3 -2.01
C3H/HeJ f 10.4 0.36   10 0.114 0.0347 9.8, 10.9 0.08
C3H/HeJ m 10.6 0.156   10 0.0494 0.0147 10.4, 10.9 0.38
C57BL/6J f 10.6 0.797   30 0.146 0.0753 9.1, 12.4 0.6
C57BL/6J m 10.4 0.826   54 0.112 0.0795 9.0, 12.2 -0.05
CBA/J f 10.3 0.498   21 0.109 0.0485 9.6, 11.3 -0.18
CBA/J m 10.8 0.54   30 0.0987 0.0501 10.0, 11.7 0.81
DBA/2J f 10.6 0.317   21 0.0692 0.03 10.0, 11.0 0.6
DBA/2J m 10.3 0.276   20 0.0618 0.0269 9.8, 10.9 -0.27
FVB/NJ f 9.77 0.34   10 0.108 0.0348 9.3, 10.3 -1.56
FVB/NJ m 10.5 0.557   12 0.161 0.0532 9.8, 11.6 0.17
NOD.CB17-Prkdcscid/J f 9.89 0.273   10 0.0862 0.0276 9.7, 10.5 -1.25
NOD.CB17-Prkdcscid/J m 10.7 0.762   10 0.241 0.0715 8.7, 11.3 0.6
NOD/ShiLtJ f 10.9 0.501   20 0.112 0.046 10.2, 11.9 1.39
NOD/ShiLtJ m 10.6 0.536   20 0.12 0.0507 9.7, 11.4 0.38


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 10.24 0.1702 10.5746 9.9054
B6.129P2-Apoetm1Unc/J m 10.21 0.1702 10.5446 9.8754
B6D2F1/J f 10.96 0.1702 11.2946 10.6254
B6D2F1/J m 11.2 0.1702 11.5346 10.8654
BALB/cByJ f 10.17 0.1203 10.4066 9.9334
BALB/cByJ m 9.86 0.1203 10.0966 9.6234
BALB/cJ f 10.16 0.1203 10.3966 9.9234
BALB/cJ m 9.4909 0.1147 9.7165 9.2653
C3H/HeJ f 10.39 0.1702 10.7246 10.0554
C3H/HeJ m 10.6 0.1702 10.9346 10.2654
C57BL/6J f 10.59 0.0982 10.7832 10.3968
C57BL/6J m 10.3963 0.0732 10.5403 10.2523
CBA/J f 10.2524 0.1174 10.4833 10.0215
CBA/J m 10.7967 0.0982 10.9898 10.6035
DBA/2J f 10.5619 0.1174 10.7928 10.331
DBA/2J m 10.28 0.1203 10.5166 10.0434
FVB/NJ f 9.77 0.1702 10.1046 9.4354
FVB/NJ m 10.4833 0.1553 10.7888 10.1779
NOD.CB17-Prkdcscid/J f 9.89 0.1702 10.2246 9.5554
NOD.CB17-Prkdcscid/J m 10.66 0.1702 10.9946 10.3254
NOD/ShiLtJ f 10.895 0.1203 11.1316 10.6584
NOD/ShiLtJ m 10.555 0.1203 10.7916 10.3184


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 10.225 0.1203 10.4616 9.9884
B6D2F1/J both 11.08 0.1203 11.3166 10.8434
BALB/cByJ both 10.015 0.0851 10.1823 9.8477
BALB/cJ both 9.8255 0.0831 9.9889 9.662
C3H/HeJ both 10.495 0.1203 10.7316 10.2584
C57BL/6J both 10.4931 0.0613 10.6136 10.3727
CBA/J both 10.5245 0.0765 10.675 10.374
DBA/2J both 10.421 0.0841 10.5862 10.2557
FVB/NJ both 10.1267 0.1152 10.3532 9.9002
NOD.CB17-Prkdcscid/J both 10.275 0.1203 10.5116 10.0384
NOD/ShiLtJ both 10.725 0.0851 10.8923 10.5577




  GENOME-WIDE ASSOCIATION (GWAS) VIEW
Plot generated with pyLMM using 132K SNP array. Click on plot to view at larger size.