Project measure / variable:   Jaxpheno3   FFA8

ID, description, units MPD:22845   FFA8   free fatty acids (plasma FFA)   [mEq/L]  at age 8wks  
Data set, strains Jaxpheno3   inbred   11 strains     sex: both     age: 8wks
Procedure lipid profile
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  STRAIN COMPARISON PLOT
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Jaxpheno3 - free fatty acids (plasma FFA) at age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means2.02   mEq/L 2.13   mEq/L
Median of the strain means2.13   mEq/L 2.10   mEq/L
SD of the strain means± 0.554 ± 0.452
Coefficient of variation (CV)0.275 0.212
Min–max range of strain means1.07   –   2.75   mEq/L 1.43   –   2.87   mEq/L
Mean sample size per strain15.8   mice 17.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.0138 1.0138 7.8971 0.0052
strain 10 68.769 6.8769 53.5686 < 0.0001
sex:strain 10 12.9826 1.2983 10.113 < 0.0001
Residuals 378 48.5259 0.1284


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 2.42 0.284   10 0.0897 0.117 2.02, 3.05 0.73
B6.129P2-Apoetm1Unc/J m 2.15 0.462   10 0.146 0.215 1.55, 2.95 0.03
B6D2F1/J f 1.72 0.261   10 0.0824 0.151 1.14, 2.04 -0.54
B6D2F1/J m 2.33 0.309   10 0.0978 0.133 1.85, 2.85 0.43
BALB/cByJ f 2.75 0.279   20 0.0623 0.101 2.23, 3.26 1.32
BALB/cByJ m 2.61 0.356   20 0.0797 0.137 1.9, 3.17 1.05
BALB/cJ f 1.71 0.272   20 0.0609 0.159 1.4, 2.2 -0.55
BALB/cJ m 1.62 0.527   22 0.112 0.326 1.25, 3.36 -1.14
C3H/HeJ f 1.31 0.147   10 0.0465 0.113 1.11, 1.64 -1.28
C3H/HeJ m 1.43 0.176   10 0.0556 0.123 1.17, 1.79 -1.56
C57BL/6J f 1.72 0.244   30 0.0446 0.142 1.35, 2.09 -0.54
C57BL/6J m 2.07 0.423   54 0.0576 0.205 0.98, 3.11 -0.14
CBA/J f 2.57 0.4   21 0.0873 0.155 1.88, 3.19 1.0
CBA/J m 2.87 0.55   30 0.1 0.192 2.0, 3.66 1.63
DBA/2J f 2.17 0.441   21 0.0963 0.203 1.52, 3.06 0.28
DBA/2J m 2.06 0.191   20 0.0427 0.0929 1.72, 2.36 -0.17
FVB/NJ f 2.62 0.297   10 0.094 0.114 2.28, 3.11 1.09
FVB/NJ m 2.6 0.316   12 0.0913 0.122 2.07, 3.22 1.03
NOD.CB17-Prkdcscid/J f 1.07 0.161   10 0.051 0.151 0.86, 1.33 -1.71
NOD.CB17-Prkdcscid/J m 2.1 0.137   10 0.0433 0.0652 2.0, 2.48 -0.08
NOD/ShiLtJ f 2.13 0.22   20 0.0492 0.103 1.84, 2.75 0.2
NOD/ShiLtJ m 1.64 0.309   20 0.069 0.188 1.18, 2.11 -1.1


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 2.421 0.1133 2.6438 2.1982
B6.129P2-Apoetm1Unc/J m 2.149 0.1133 2.3718 1.9262
B6D2F1/J f 1.72 0.1133 1.9428 1.4972
B6D2F1/J m 2.334 0.1133 2.5568 2.1112
BALB/cByJ f 2.753 0.0801 2.9105 2.5955
BALB/cByJ m 2.608 0.0801 2.7655 2.4505
BALB/cJ f 1.7145 0.0801 1.872 1.557
BALB/cJ m 1.6173 0.0764 1.7675 1.4671
C3H/HeJ f 1.307 0.1133 1.5298 1.0842
C3H/HeJ m 1.434 0.1133 1.6568 1.2112
C57BL/6J f 1.722 0.0654 1.8506 1.5934
C57BL/6J m 2.0663 0.0488 2.1622 1.9704
CBA/J f 2.5714 0.0782 2.7252 2.4177
CBA/J m 2.8667 0.0654 2.9953 2.738
DBA/2J f 2.171 0.0782 2.3247 2.0172
DBA/2J m 2.055 0.0801 2.2125 1.8975
FVB/NJ f 2.617 0.1133 2.8398 2.3942
FVB/NJ m 2.6008 0.1034 2.8042 2.3975
NOD.CB17-Prkdcscid/J f 1.069 0.1133 1.2918 0.8462
NOD.CB17-Prkdcscid/J m 2.101 0.1133 2.3238 1.8782
NOD/ShiLtJ f 2.1315 0.0801 2.289 1.974
NOD/ShiLtJ m 1.6445 0.0801 1.802 1.487


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 2.285 0.0801 2.4425 2.1275
B6D2F1/J both 2.027 0.0801 2.1845 1.8695
BALB/cByJ both 2.6805 0.0567 2.7919 2.5691
BALB/cJ both 1.6659 0.0553 1.7747 1.5571
C3H/HeJ both 1.3705 0.0801 1.528 1.213
C57BL/6J both 1.8941 0.0408 1.9744 1.8139
CBA/J both 2.719 0.051 2.8193 2.6188
DBA/2J both 2.113 0.056 2.223 2.0029
FVB/NJ both 2.6089 0.0767 2.7597 2.4581
NOD.CB17-Prkdcscid/J both 1.585 0.0801 1.7425 1.4275
NOD/ShiLtJ both 1.888 0.0567 1.9994 1.7766




  GWAS USING LINEAR MIXED MODELS