Project measure / variable:   Jaxpheno3   TG16

ID, description, units MPD:22841   TG16   triglycerides (plasma, 4h fast)   [mg/dL]  at age 16wks  
Data set, strains Jaxpheno3   inbred   8 strains     sex: both     age: 16wks
Procedure lipid profile
Ontology mappings

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  STRAIN COMPARISON PLOT
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Jaxpheno3 - triglycerides (plasma, 4h fast) at age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means176   mg/dL 130   mg/dL
Median of the strain means140   mg/dL 126   mg/dL
SD of the strain means± 132 ± 45.2
Coefficient of variation (CV)0.751 0.348
Min–max range of strain means66.7   –   463   mg/dL 70.7   –   210   mg/dL
Mean sample size per strain16.2   mice 16.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 368592.4728 368592.4728 11.2285 0.0009
strain 7 2288430.1995 326918.5999 9.9589 < 0.0001
sex:strain 7 1000167.9626 142881.1375 4.3526 0.0001
Residuals 245 8042526.4762 32826.6387


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 123.0 34.8   10 11.0 0.283 79.0, 197.0 -0.4
B6D2F1/J m 123.0 35.2   10 11.1 0.286 68.0, 174.0 -0.15
BALB/cByJ f 174.0 34.1   20 7.62 0.195 110.0, 253.0 -0.01
BALB/cByJ m 128.0 19.8   20 4.42 0.154 77.0, 154.0 -0.04
C3H/HeJ f 91.3 18.3   10 5.78 0.2 65.0, 131.0 -0.64
C3H/HeJ m 92.1 8.37   10 2.65 0.0909 79.0, 107.0 -0.83
C57BL/6J f 66.7 21.9   30 4.01 0.329 46.0, 135.0 -0.83
C57BL/6J m 70.7 16.0   30 2.91 0.226 46.0, 111.0 -1.3
CBA/J f 257.0 63.8   10 20.2 0.249 111.0, 331.0 0.62
CBA/J m 210.0 87.2   20 19.5 0.415 126.0, 408.0 1.78
DBA/2J f 156.0 37.9   10 12.0 0.244 89.0, 198.0 -0.15
DBA/2J m 172.0 16.9   10 5.34 0.098 143.0, 199.0 0.94
NOD.CB17-Prkdcscid/J f 73.3 15.6   10 4.94 0.213 59.0, 103.0 -0.78
NOD.CB17-Prkdcscid/J m 99.0 39.4   10 12.5 0.398 65.0, 174.0 -0.68
NOD/ShiLtJ f 463.0 513.0   30 93.7 1.11 49.0, 2412.0 2.18
NOD/ShiLtJ m 142.0 73.9   21 16.1 0.519 64.0, 260.0 0.27


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 123.0 57.2945 235.8527 10.1473
B6D2F1/J m 123.2 57.2945 236.0527 10.3473
BALB/cByJ f 174.5 40.5134 254.2989 94.7011
BALB/cByJ m 128.2 40.5134 207.9989 48.4011
C3H/HeJ f 91.3 57.2945 204.1527 0.0
C3H/HeJ m 92.1 57.2945 204.9527 0.0
C57BL/6J f 66.7333 33.079 131.8889 1.5778
C57BL/6J m 70.7 33.079 135.8555 5.5445
CBA/J f 256.9 57.2945 369.7527 144.0473
CBA/J m 209.9 40.5134 289.6989 130.1011
DBA/2J f 155.5 57.2945 268.3527 42.6473
DBA/2J m 172.3 57.2945 285.1527 59.4473
NOD.CB17-Prkdcscid/J f 73.3 57.2945 186.1527 0.0
NOD.CB17-Prkdcscid/J m 99.0 57.2945 211.8527 0.0
NOD/ShiLtJ f 463.0333 33.079 528.1889 397.8778
NOD/ShiLtJ m 142.4286 39.537 220.3043 64.5528


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 123.1 40.5134 202.8989 43.3011
BALB/cByJ both 151.35 28.6473 207.7763 94.9237
C3H/HeJ both 91.7 40.5134 171.4989 11.9011
C57BL/6J both 68.7167 23.3904 114.7886 22.6447
CBA/J both 233.4 35.0856 302.5079 164.2921
DBA/2J both 163.9 40.5134 243.6989 84.1011
NOD.CB17-Prkdcscid/J both 86.15 40.5134 165.9489 6.3511
NOD/ShiLtJ both 302.731 25.775 353.4997 251.9622




  GWAS USING LINEAR MIXED MODELS