Project measure / variable:   Jaxpheno3   TP16

ID, description, units MPD:22813   TP16   total protein (plasma TP)   [g/dL]  at age 16wks  
Data set, strains Jaxpheno3   inbred   8 strains     sex: both     age: 16wks
Procedure metabolic panel
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  STRAIN COMPARISON PLOT
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Jaxpheno3 - total protein (plasma TP) at age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains8 strains
Mean of the strain means5.93   g/dL 6.17   g/dL
Median of the strain means5.95   g/dL 6.24   g/dL
SD of the strain means± 0.377 ± 0.209
Coefficient of variation (CV)0.0635 0.0338
Min–max range of strain means5.26   –   6.39   g/dL 5.90   –   6.41   g/dL
Mean sample size per strain16.2   mice 16.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 6.3687 6.3687 40.8125 < 0.0001
strain 7 18.8389 2.6913 17.2465 < 0.0001
sex:strain 7 10.9477 1.564 10.0223 < 0.0001
Residuals 245 38.2316 0.156


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 6.36 0.288   10 0.0909 0.0452 5.9, 6.8 1.14
B6D2F1/J m 6.32 0.487   10 0.154 0.0771 5.7, 7.2 0.71
BALB/cByJ f 5.6 0.215   20 0.0481 0.0384 5.2, 5.9 -0.88
BALB/cByJ m 5.91 0.217   20 0.0486 0.0368 5.3, 6.3 -1.26
C3H/HeJ f 6.1 0.141   10 0.0447 0.0232 5.9, 6.3 0.45
C3H/HeJ m 6.23 0.149   10 0.0473 0.024 6.0, 6.5 0.28
C57BL/6J f 6.39 0.432   30 0.0788 0.0676 5.6, 7.5 1.22
C57BL/6J m 6.41 0.311   30 0.0568 0.0485 5.6, 6.9 1.14
CBA/J f 5.93 0.245   10 0.0775 0.0413 5.5, 6.4 0.0
CBA/J m 5.9 0.362   20 0.0809 0.0613 5.4, 6.6 -1.3
DBA/2J f 5.84 0.184   10 0.0581 0.0315 5.5, 6.1 -0.24
DBA/2J m 5.99 0.12   10 0.0379 0.02 5.8, 6.2 -0.87
NOD.CB17-Prkdcscid/J f 5.97 0.17   10 0.0539 0.0285 5.7, 6.3 0.1
NOD.CB17-Prkdcscid/J m 6.24 0.158   10 0.0499 0.0253 6.0, 6.5 0.32
NOD/ShiLtJ f 5.26 0.795   30 0.145 0.151 3.7, 6.6 -1.78
NOD/ShiLtJ m 6.38 0.367   21 0.0802 0.0576 5.5, 7.1 0.99


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 6.36 0.1249 6.6061 6.1139
B6D2F1/J m 6.32 0.1249 6.5661 6.0739
BALB/cByJ f 5.6 0.0883 5.774 5.426
BALB/cByJ m 5.91 0.0883 6.084 5.736
C3H/HeJ f 6.1 0.1249 6.3461 5.8539
C3H/HeJ m 6.23 0.1249 6.4761 5.9839
C57BL/6J f 6.39 0.0721 6.5321 6.2479
C57BL/6J m 6.41 0.0721 6.5521 6.2679
CBA/J f 5.93 0.1249 6.1761 5.6839
CBA/J m 5.905 0.0883 6.079 5.731
DBA/2J f 5.84 0.1249 6.0861 5.5939
DBA/2J m 5.99 0.1249 6.2361 5.7439
NOD.CB17-Prkdcscid/J f 5.97 0.1249 6.2161 5.7239
NOD.CB17-Prkdcscid/J m 6.24 0.1249 6.4861 5.9939
NOD/ShiLtJ f 5.26 0.0721 5.4021 5.1179
NOD/ShiLtJ m 6.3762 0.0862 6.546 6.2064


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 6.34 0.0883 6.514 6.166
BALB/cByJ both 5.755 0.0625 5.878 5.632
C3H/HeJ both 6.165 0.0883 6.339 5.991
C57BL/6J both 6.4 0.051 6.5005 6.2995
CBA/J both 5.9175 0.0765 6.0682 5.7668
DBA/2J both 5.915 0.0883 6.089 5.741
NOD.CB17-Prkdcscid/J both 6.105 0.0883 6.279 5.931
NOD/ShiLtJ both 5.8181 0.0562 5.9288 5.7074




  GWAS USING LINEAR MIXED MODELS