Phenotype measure:   Brown2   CS+dig_pct_pooled

ID, description, units MPD:22570   CS+dig_pct_pooled   percent digging pooled across training conditions (Lemon CS+ plus Rose CS+)   [%]
Data set, strains Brown2   inbred   13 strains     sex: both     age: 10-18wks
Procedure olfactory discrimination task
Ontology mappings

  STRAIN COMPARISON PLOT
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Brown2 - percent digging pooled across training conditions (Lemon CS+ plus Rose CS+)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested13 strains13 strains
Mean of the strain means83.5   % 87.2   %
Median of the strain means83.8   % 90.2   %
SD of the strain means± 8.05 ± 10.2
Coefficient of variation (CV)0.0964 0.117
Min–max range of strain means72.1   –   100   % 62.4   –   97.5   %
Mean sample size per strain10.9   mice 10.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1129.8294 1129.8294 1.5404 0.2157
strain 12 14015.1541 1167.9295 1.5923 0.0941
sex:strain 12 6764.8956 563.7413 0.7686 0.6826
Residuals 250 183371.0748 733.4843


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 86.1 29.6   11 8.93 0.344 0.32
129S1/SvImJ m 62.4 44.0   14 11.8 0.706 -2.43
A/J f 74.5 43.2   16 10.8 0.58 -1.12
A/J m 83.1 27.6   17 6.7 0.332 -0.4
AKR/J f 74.7 33.6   12 9.7 0.45 -1.09
AKR/J m 73.4 30.5   12 8.79 0.415 -1.35
BALB/cByJ f 83.8 15.7   17 3.81 0.188 57.4, 100.0 0.04
BALB/cByJ m 97.5 3.24   9 1.08 0.0332 92.0, 100.0 1.02
BALB/cJ f 72.1 29.1   19 6.68 0.404 8.58, 100.0 -1.42
BALB/cJ m 85.6 12.8   10 4.05 0.15 62.5, 100.0 -0.15
C3H/HeJ f 93.5 12.0   10 3.8 0.129 63.4, 100.0 1.24
C3H/HeJ m 92.2 11.0   9 3.66 0.119 68.2, 100.0 0.5
C57BL/6J f 100.0 0.0   2   0.0 0.0 100.0, 100.0 2.05
C57BL/6J m 97.3 3.99   5 1.78 0.041 91.1, 100.0 1.0
CAST/EiJ f 87.4 21.9   7 8.29 0.251 47.4, 100.0 0.48
CAST/EiJ m 92.2 13.7   9 4.56 0.148 57.2, 100.0 0.5
DBA/2J f 77.1 23.0   11 6.93 0.298 31.6, 100.0 -0.8
DBA/2J m 82.5 25.9   11 7.8 0.314 35.6, 100.0 -0.46
FVB/NJ f 80.2 36.4   8 12.9 0.454 -0.41
FVB/NJ m 86.2 22.0   10 6.96 0.255 44.6, 100.0 -0.09
MOLF/EiJ f 85.9 35.0   8 12.4 0.407 0.3
MOLF/EiJ m 96.3 10.5   8 3.73 0.109 70.2, 100.0 0.9
SJL/J f 89.1 30.6   10 9.68 0.343 2.64, 100.0 0.7
SJL/J m 94.1 9.73   9 3.24 0.103 73.8, 100.0 0.68
SM/J f 81.1 34.8   10 11.0 0.429 8.31, 100.0 -0.3
SM/J m 90.2 19.1   12 5.53 0.212 35.9, 100.0 0.3


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 86.1273 8.1658 102.2098 70.0447
129S1/SvImJ m 62.3714 7.2382 76.6271 48.1158
A/J f 74.5175 6.7707 87.8524 61.1826
A/J m 83.1471 6.5686 96.0839 70.2103
AKR/J f 74.6667 7.8182 90.0645 59.2688
AKR/J m 73.3583 7.8182 88.7562 57.9605
BALB/cByJ f 83.8235 6.5686 96.7603 70.8867
BALB/cByJ m 97.4667 9.0276 115.2466 79.6867
BALB/cJ f 72.0832 6.2132 84.3201 59.8462
BALB/cJ m 85.57 8.5644 102.4375 68.7025
C3H/HeJ f 93.52 8.5644 110.3875 76.6525
C3H/HeJ m 92.2333 9.0276 110.0133 74.4534
C57BL/6J f 100.0 19.1505 137.7169 62.2831
C57BL/6J m 97.32 12.1118 121.1743 73.4657
CAST/EiJ f 87.3857 10.2364 107.5462 67.2252
CAST/EiJ m 92.1889 9.0276 109.9688 74.409
DBA/2J f 77.1364 8.1658 93.2189 61.0538
DBA/2J m 82.5 8.1658 98.5825 66.4175
FVB/NJ f 80.225 9.5753 99.0835 61.3665
FVB/NJ m 86.24 8.5644 103.1075 69.3725
MOLF/EiJ f 85.8875 9.5753 104.746 67.029
MOLF/EiJ m 96.275 9.5753 115.1335 77.4165
SJL/J f 89.114 8.5644 105.9815 72.2465
SJL/J m 94.0778 9.0276 111.8577 76.2979
SM/J f 81.101 8.5644 97.9685 64.2335
SM/J m 90.2083 7.8182 105.6062 74.8105


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 74.2494 5.456 84.995 63.5038
A/J both 78.8323 4.7167 88.1218 69.5428
AKR/J both 74.0125 5.5283 84.9004 63.1246
BALB/cByJ both 90.6451 5.5822 101.6393 79.6509
BALB/cJ both 78.8266 5.2904 89.246 68.4072
C3H/HeJ both 92.8767 6.2219 105.1306 80.6227
C57BL/6J both 98.66 11.3296 120.9736 76.3464
CAST/EiJ both 89.7873 6.8243 103.2277 76.3469
DBA/2J both 79.8182 5.7741 91.1903 68.4461
FVB/NJ both 83.2325 6.4233 95.8831 70.5819
MOLF/EiJ both 91.0812 6.7707 104.4162 77.7463
SJL/J both 91.5959 6.2219 103.8499 79.3419
SM/J both 85.6547 5.7981 97.074 74.2353




  GWAS USING LINEAR MIXED MODELS