Phenotype measure:   Brown2   dig_tot


  STRAIN COMPARISON PLOT
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Brown2 - total time spent digging



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested13 strains13 strains
Mean of the strain means32.3   s 34.7   s
Median of the strain means31.0   s 37.0   s
SD of the strain means± 13.1 ± 13.0
Coefficient of variation (CV)0.406 0.373
Min–max range of strain means4.98   –   53.8   s 11.7   –   56.3   s
Mean sample size per strain12.2   mice 11.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 513.8727 513.8727 0.7143 0.3987
strain 12 38828.8858 3235.7405 4.4977 < 0.0001
sex:strain 12 11155.0074 929.5839 1.2921 0.2224
Residuals 279 200717.5895 719.4179


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 44.1 38.6   11 11.7 0.877 1.72, 140.0 0.9
129S1/SvImJ m 23.2 22.1   15 5.7 0.951 -0.89
A/J f 20.6 15.3   17 3.72 0.746 -0.89
A/J m 43.9 37.1   18 8.75 0.847 0.71
AKR/J f 28.3 31.1   12 8.98 1.1 0.47, 106.0 -0.3
AKR/J m 31.7 20.2   12 5.84 0.639 5.75, 68.5 -0.23
BALB/cByJ f 40.4 11.9   17 2.88 0.294 20.8, 56.4 0.62
BALB/cByJ m 44.1 21.7   10 6.86 0.493 0.72
BALB/cJ f 30.8 23.3   19 5.35 0.757 1.01, 77.0 -0.11
BALB/cJ m 37.0 29.0   11 8.74 0.784 0.18
C3H/HeJ f 47.2 22.3   10 7.04 0.472 12.0, 81.0 1.14
C3H/HeJ m 56.3 24.9   9 8.3 0.442 22.0, 94.1 1.66
C57BL/6J f 28.6 31.0   2   21.9 1.09 6.65, 50.5 -0.28
C57BL/6J m 32.1 29.0   6 11.8 0.903 -0.2
CAST/EiJ f 31.0 32.9   7 12.4 1.06 4.42, 90.7 -0.1
CAST/EiJ m 38.8 23.3   9 7.76 0.6 2.18, 66.4 0.31
DBA/2J f 40.5 33.8   12 9.75 0.833 0.63
DBA/2J m 43.7 48.4   12 14.0 1.11 0.69
FVB/NJ f 4.98 5.56   14 1.49 1.12 -2.08
FVB/NJ m 11.7 12.2   14 3.25 1.04 -1.78
MOLF/EiJ f 18.5 25.4   12 7.34 1.37 -1.05
MOLF/EiJ m 29.5 24.7   10 7.81 0.837 -0.4
SJL/J f 31.0 28.4   12 8.2 0.917 -0.1
SJL/J m 13.6 12.2   12 3.51 0.896 -1.63
SM/J f 53.8 39.1   10 12.4 0.726 17.7, 151.0 1.64
SM/J m 45.9 28.8   12 8.3 0.626 10.8, 119.0 0.86


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 44.0855 8.0871 60.005 28.1659
129S1/SvImJ m 23.2207 6.9254 36.8533 9.588
A/J f 20.5506 6.5053 33.3563 7.7449
A/J m 43.865 6.322 56.3099 31.4201
AKR/J f 28.2542 7.7428 43.496 13.0124
AKR/J m 31.6533 7.7428 46.8951 16.4115
BALB/cByJ f 40.4471 6.5053 53.2527 27.6414
BALB/cByJ m 44.07 8.4819 60.7665 27.3735
BALB/cJ f 30.7921 6.1534 42.9051 18.6792
BALB/cJ m 36.9664 8.0871 52.8859 21.0468
C3H/HeJ f 47.17 8.4819 63.8665 30.4735
C3H/HeJ m 56.3333 8.9407 73.933 38.7336
C57BL/6J f 28.575 18.966 65.9096 0.0
C57BL/6J m 32.0817 10.95 53.6368 10.5265
CAST/EiJ f 31.0171 10.1378 50.9733 11.0609
CAST/EiJ m 38.8033 8.9407 56.403 21.2036
DBA/2J f 40.51 7.7428 55.7518 25.2682
DBA/2J m 43.7333 7.7428 58.9751 28.4915
FVB/NJ f 4.9829 7.1685 19.094 0.0
FVB/NJ m 11.7364 7.1685 25.8476 0.0
MOLF/EiJ f 18.5008 7.7428 33.7426 3.259
MOLF/EiJ m 29.479 8.4819 46.1755 12.7825
SJL/J f 30.9675 7.7428 46.2093 15.7257
SJL/J m 13.57 7.7428 28.8118 0.0
SM/J f 53.84 8.4819 70.5365 37.1435
SM/J m 45.95 7.7428 61.1918 30.7082


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 33.6531 5.3236 44.1326 23.1735
A/J both 32.2078 4.5356 41.1361 23.2795
AKR/J both 29.9538 5.475 40.7313 19.1762
BALB/cByJ both 42.2585 5.3446 52.7795 31.7376
BALB/cJ both 33.8792 5.081 43.8812 23.8773
C3H/HeJ both 51.7517 6.1619 63.8814 39.6219
C57BL/6J both 30.3283 10.95 51.8835 8.7732
CAST/EiJ both 34.9102 6.7585 48.2144 21.6061
DBA/2J both 42.1217 5.475 52.8992 31.3441
FVB/NJ both 8.3596 5.0689 18.3377 0.0
MOLF/EiJ both 23.9899 5.7422 35.2935 12.6863
SJL/J both 22.2687 5.475 33.0463 11.4912
SM/J both 49.895 5.7422 61.1986 38.5914




  GWAS USING LINEAR MIXED MODELS