Phenotype measure:   Brown2   odorL_dig_pct


  STRAIN COMPARISON PLOT
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Brown2 - percent digging odor pot, conditioned stimulus lemon



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested13 strains13 strains
Mean of the strain means87.5   % 90.0   %
Median of the strain means88.4   % 93.1   %
SD of the strain means± 10.1 ± 10.6
Coefficient of variation (CV)0.116 0.117
Min–max range of strain means66.7   –   100   % 62.7   –   99.2   %
Mean sample size per strain5.3   mice 5.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 21.7268 21.7268 0.0434 0.8353
strain 11 7856.352 714.2138 1.4282 0.1706
sex:strain 11 5662.4157 514.7651 1.0294 0.4259
Residuals 108 54007.7889 500.0721


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 93.8 7.71   5 3.45 0.0822 80.9, 100.0 0.62
129S1/SvImJ m 62.7 43.6   8 15.4 0.695 -2.58
A/J f 89.8 28.6   10 9.04 0.318 9.08, 100.0 0.23
A/J m 89.9 13.7   7 5.18 0.152 64.8, 100.0 -0.01
AKR/J f 71.6 43.7   6 17.9 0.611 -1.56
AKR/J m 72.7 26.2   6 10.7 0.361 29.5, 100.0 -1.64
BALB/cByJ f 82.9 14.9   8 5.26 0.18 65.3, 100.0 -0.45
BALB/cByJ m 96.8 3.35   5 1.5 0.0346 92.0, 100.0 0.65
BALB/cJ f 86.1 17.0   8 6.03 0.198 57.3, 100.0 -0.13
BALB/cJ m 88.1 14.5   5 6.48 0.164 62.5, 96.6 -0.18
C3H/HeJ f 94.8 7.77   5 3.47 0.082 81.6, 100.0 0.72
C3H/HeJ m 93.1 8.12   4 4.06 0.0872 84.6, 100.0 0.3
C57BL/6J f 100.0 0.0   1   0.0 0.0 100.0, 100.0 1.24
C57BL/6J m 95.5 4.45   3 2.57 0.0466 91.1, 100.0 0.52
CAST/EiJ f 82.3 30.2   3 17.4 0.367 47.4, 100.0 -0.51
CAST/EiJ m 96.6 3.29   5 1.47 0.034 93.2, 100.0 0.63
DBA/2J f 84.1 18.6   5 8.3 0.221 52.7, 100.0 -0.33
DBA/2J m 93.1 15.0   5 6.7 0.161 66.3, 100.0 0.3
FVB/NJ f 88.4 20.8   5 9.28 0.235 52.1, 100.0 0.09
FVB/NJ m 99.2 1.88   5 0.84 0.0189 95.8, 100.0 0.88
MOLF/EiJ f 66.7 57.7   3 33.3 0.866 -2.05
MOLF/EiJ m 92.5 14.9   4 7.45 0.161 70.2, 100.0 0.24
SJL/J f 97.7 5.14   5 2.3 0.0526 88.5, 100.0 1.01
SJL/J m 97.4 5.2   4 2.6 0.0534 89.6, 100.0 0.7
SM/J f 98.8 2.59   5 1.16 0.0262 94.2, 100.0 1.12
SM/J m 91.9 11.5   6 4.68 0.125 69.6, 100.0 0.18


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 93.8 10.0007 113.6232 73.9768
129S1/SvImJ m 62.6625 7.9063 78.3341 46.9909
A/J f 89.798 7.0716 103.8151 75.7809
A/J m 89.8714 8.4522 106.6251 73.1178
AKR/J f 71.5833 9.1294 89.6793 53.4873
AKR/J m 72.65 9.1294 90.746 54.554
BALB/cByJ f 82.9375 7.9063 98.6091 67.2659
BALB/cByJ m 96.78 10.0007 116.6032 76.9568
BALB/cJ f 86.1375 7.9063 101.8091 70.4659
BALB/cJ m 88.14 10.0007 107.9632 68.3168
C3H/HeJ f 94.76 10.0007 114.5832 74.9368
C3H/HeJ m 93.05 11.1811 115.213 70.887
CAST/EiJ f 82.2667 12.9109 107.8583 56.6751
CAST/EiJ m 96.64 10.0007 116.4632 76.8168
DBA/2J f 84.14 10.0007 103.9632 64.3168
DBA/2J m 93.08 10.0007 112.9032 73.2568
FVB/NJ f 88.36 10.0007 108.1832 68.5368
FVB/NJ m 99.16 10.0007 118.9832 79.3368
MOLF/EiJ f 66.6667 12.9109 92.2583 41.0751
MOLF/EiJ m 92.55 11.1811 114.713 70.387
SJL/J f 97.7 10.0007 117.5232 77.8768
SJL/J m 97.4 11.1811 119.563 75.237
SM/J f 98.84 10.0007 118.6632 79.0168
SM/J m 91.9333 9.1294 110.0293 73.8373


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 78.2313 6.3742 90.8661 65.5964
A/J both 89.8347 5.5101 100.7567 78.9127
AKR/J both 72.1167 6.4554 84.9125 59.3209
BALB/cByJ both 89.8588 6.3742 102.4936 77.2239
BALB/cJ both 87.1388 6.3742 99.7736 74.5039
C3H/HeJ both 93.905 7.5005 108.7724 79.0376
CAST/EiJ both 89.4533 8.1656 105.6389 73.2678
DBA/2J both 88.61 7.0716 102.6271 74.5929
FVB/NJ both 93.76 7.0716 107.7771 79.7429
MOLF/EiJ both 79.6083 8.5397 96.5356 62.6811
SJL/J both 97.55 7.5005 112.4174 82.6826
SM/J both 95.3867 6.7705 108.807 81.9663




  GWAS USING LINEAR MIXED MODELS