Project measure / variable:   Brown2   rev_lat_d4

ID, description, units MPD:22518   rev_lat_d4   reversal training mean latency to escape   [s]  day4  
Data set, strains Brown2   inbred   13 strains     sex: both     age: 10-18wks
Procedure Barnes circular maze
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  STRAIN COMPARISON PLOT
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Brown2 - reversal training mean latency to escape day4



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested13 strains13 strains
Mean of the strain means81.8   s 88.5   s
Median of the strain means74.3   s 82.3   s
SD of the strain means± 52.0 ± 65.7
Coefficient of variation (CV)0.635 0.743
Min–max range of strain means17.9   –   203   s 16.1   –   265   s
Mean sample size per strain11.6   mice 11.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 12960.7601 12960.7601 2.9278 0.0882
strain 12 1055397.8685 87949.8224 19.8673 < 0.0001
sex:strain 12 72568.7486 6047.3957 1.3661 0.1817
Residuals 280 1239520.6091 4426.8593


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 165.0 116.0   12 33.4 0.704 8.13, 300.0 1.6
129S1/SvImJ m 154.0 107.0   12 30.9 0.694 12.5, 300.0 1.0
A/J f 203.0 114.0   12 33.0 0.565 35.8, 300.0 2.33
A/J m 265.0 50.2   18 11.8 0.19 137.0, 300.0 2.68
AKR/J f 60.9 63.8   12 18.4 1.05 14.2, 244.0 -0.4
AKR/J m 102.0 77.8   12 22.5 0.764 16.6, 297.0 0.21
BALB/cByJ f 78.2 79.4   21 17.3 1.02 8.29, 300.0 -0.07
BALB/cByJ m 57.3 39.2   12 11.3 0.683 8.13, 138.0 -0.47
BALB/cJ f 32.9 30.0   14 8.01 0.912 9.88, 112.0 -0.94
BALB/cJ m 50.0 41.4   10 13.1 0.828 4.75, 128.0 -0.59
C3H/HeJ f 63.5 32.2   10 10.2 0.507 37.2, 135.0 -0.35
C3H/HeJ m 102.0 67.1   10 21.2 0.657 35.2, 212.0 0.21
C57BL/6J f 31.6 36.6   11 11.0 1.16 6.68, 134.0 -0.97
C57BL/6J m 26.9 14.2   12 4.09 0.526 13.2, 60.5 -0.94
CAST/EiJ f 17.9 11.2   4 5.59 0.623 7.28, 32.2 -1.23
CAST/EiJ m 16.1 5.86   9 1.95 0.363 6.82, 24.8 -1.1
DBA/2J f 100.0 57.8   12 16.7 0.576 8.25, 206.0 0.35
DBA/2J m 42.0 66.5   11 20.1 1.58 6.5, 232.0 -0.71
FVB/NJ f 89.9 50.7   11 15.3 0.564 28.2, 183.0 0.16
FVB/NJ m 117.0 88.9   12 25.7 0.763 14.2, 280.0 0.43
MOLF/EiJ f 58.3 29.3   12 8.45 0.502 29.7, 129.0 -0.45
MOLF/EiJ m 49.2 34.9   11 10.5 0.709 9.75, 114.0 -0.6
SJL/J f 74.3 40.6   12 11.7 0.546 30.8, 176.0 -0.14
SJL/J m 87.0 73.5   12 21.2 0.845 26.3, 260.0 -0.02
SM/J f 88.3 83.3   10 26.4 0.944 14.0, 257.0 0.12
SM/J m 82.3 83.3   12 24.1 1.01 8.68, 226.0 -0.09


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 164.5192 19.2069 202.3274 126.7109
129S1/SvImJ m 154.0667 19.2069 191.8749 116.2584
A/J f 202.675 19.2069 240.4833 164.8667
A/J m 264.9444 15.6824 295.8148 234.0741
AKR/J f 60.9417 19.2069 98.7499 23.1334
AKR/J m 101.8583 19.2069 139.6666 64.0501
BALB/cByJ f 78.1605 14.5191 106.7408 49.5801
BALB/cByJ m 57.3358 19.2069 95.1441 19.5276
BALB/cJ f 32.8629 17.7821 67.8665 0.0
BALB/cJ m 49.965 21.0401 91.3819 8.5481
C3H/HeJ f 63.52 21.0401 104.9369 22.1031
C3H/HeJ m 102.15 21.0401 143.5669 60.7331
C57BL/6J f 31.5718 20.061 71.0612 0.0
C57BL/6J m 26.925 19.2069 64.7333 0.0
CAST/EiJ f 17.945 33.2673 83.4308 0.0
CAST/EiJ m 16.1122 22.1782 59.7694 0.0
DBA/2J f 100.3458 19.2069 138.1541 62.5376
DBA/2J m 42.0136 20.061 81.5031 2.5242
FVB/NJ f 89.8727 20.061 129.3622 50.3833
FVB/NJ m 116.6167 19.2069 154.4249 78.8084
MOLF/EiJ f 58.3333 19.2069 96.1416 20.5251
MOLF/EiJ m 49.2045 20.061 88.694 9.7151
SJL/J f 74.3 19.2069 112.1083 36.4917
SJL/J m 87.0333 19.2069 124.8416 49.2251
SM/J f 88.31 21.0401 129.7269 46.8931
SM/J m 82.3075 19.2069 120.1158 44.4992


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 159.2929 13.5813 186.0274 132.5584
A/J both 233.8097 12.398 258.2148 209.4046
AKR/J both 81.4 13.5813 108.1345 54.6655
BALB/cByJ both 67.7482 12.0386 91.4457 44.0506
BALB/cJ both 41.4139 13.774 68.5276 14.3002
C3H/HeJ both 82.835 14.8776 112.1211 53.5489
C57BL/6J both 29.2484 13.8866 56.5837 1.9131
CAST/EiJ both 17.0286 19.9912 56.3807 0.0
DBA/2J both 71.1797 13.8866 98.5151 43.8444
FVB/NJ both 103.2447 13.8866 130.58 75.9094
MOLF/EiJ both 53.7689 13.8866 81.1043 26.4336
SJL/J both 80.6667 13.5813 107.4011 53.9322
SM/J both 85.3087 14.2442 113.3481 57.2694




  GWAS USING LINEAR MIXED MODELS