Project measure / variable:   Brown2   rev_lat_d1

ID, description, units MPD:22517   rev_lat_d1   reversal training mean latency to escape   [s]  day1  
Data set, strains Brown2   inbred   13 strains     sex: both     age: 10-18wks
Procedure Barnes circular maze
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  STRAIN COMPARISON PLOT
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Brown2 - reversal training mean latency to escape day1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested13 strains13 strains
Mean of the strain means108   s 117   s
Median of the strain means121   s 96.5   s
SD of the strain means± 57.3 ± 69.0
Coefficient of variation (CV)0.529 0.587
Min–max range of strain means18.4   –   223   s 42.4   –   266   s
Mean sample size per strain11.6   mice 11.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 14681.4963 14681.4963 2.6904 0.1021
strain 12 1146571.6858 95547.6405 17.5093 < 0.0001
sex:strain 12 72336.9855 6028.0821 1.1047 0.356
Residuals 283 1544325.1693 5456.9794


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 183.0 124.0   12 35.8 0.679 14.8, 300.0 1.31
129S1/SvImJ m 245.0 79.6   12 23.0 0.325 62.1, 300.0 1.85
A/J f 223.0 79.9   12 23.1 0.358 82.4, 300.0 2.01
A/J m 266.0 49.5   18 11.7 0.186 107.0, 300.0 2.15
AKR/J f 138.0 120.0   12 34.6 0.868 7.58, 300.0 0.52
AKR/J m 125.0 86.8   12 25.1 0.692 14.8, 278.0 0.11
BALB/cByJ f 76.6 67.8   21 14.8 0.885 6.25, 300.0 -0.55
BALB/cByJ m 96.5 75.6   12 21.8 0.783 17.5, 212.0 -0.3
BALB/cJ f 52.8 63.3   14 16.9 1.2 9.01, 252.0 -0.97
BALB/cJ m 95.9 99.3   10 31.4 1.04 6.93, 270.0 -0.31
C3H/HeJ f 127.0 77.3   10 24.4 0.608 36.2, 282.0 0.33
C3H/HeJ m 132.0 84.7   10 26.8 0.641 24.5, 300.0 0.21
C57BL/6J f 37.9 44.2   11 13.3 1.17 12.2, 168.0 -1.23
C57BL/6J m 42.4 23.7   12 6.83 0.558 17.8, 105.0 -1.09
CAST/EiJ f 18.4 9.39   4 4.69 0.509 8.93, 29.6 -1.57
CAST/EiJ m 44.5 29.3   12 8.46 0.658 14.8, 125.0 -1.06
DBA/2J f 121.0 70.5   12 20.4 0.584 21.0, 267.0 0.22
DBA/2J m 66.0 67.7   11 20.4 1.03 11.4, 247.0 -0.75
FVB/NJ f 126.0 81.5   11 24.6 0.647 57.4, 300.0 0.31
FVB/NJ m 149.0 69.1   12 19.9 0.463 42.3, 248.0 0.46
MOLF/EiJ f 68.5 36.8   12 10.6 0.537 34.0, 145.0 -0.69
MOLF/EiJ m 72.1 42.9   11 12.9 0.594 25.2, 159.0 -0.66
SJL/J f 112.0 60.8   12 17.5 0.542 21.2, 223.0 0.07
SJL/J m 101.0 73.0   12 21.1 0.725 24.2, 246.0 -0.24
SM/J f 122.0 95.6   10 30.2 0.785 12.8, 271.0 0.24
SM/J m 92.0 79.6   12 23.0 0.866 17.4, 251.0 -0.37


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 182.55 21.3248 224.5254 140.5746
129S1/SvImJ m 245.175 21.3248 287.1504 203.1996
A/J f 222.95 21.3248 264.9254 180.9746
A/J m 265.7222 17.4116 299.995 231.4494
AKR/J f 137.965 21.3248 179.9404 95.9896
AKR/J m 125.4667 21.3248 167.4421 83.4913
BALB/cByJ f 76.6357 16.1201 108.3661 44.9053
BALB/cByJ m 96.5333 21.3248 138.5087 54.5579
BALB/cJ f 52.7793 19.743 91.641 13.9176
BALB/cJ m 95.873 23.3602 141.8548 49.8912
C3H/HeJ f 127.13 23.3602 173.1118 81.1482
C3H/HeJ m 132.17 23.3602 178.1518 86.1882
C57BL/6J f 37.8636 22.2731 81.7055 0.0
C57BL/6J m 42.3917 21.3248 84.3671 0.4163
CAST/EiJ f 18.4325 36.9357 91.136 0.0
CAST/EiJ m 44.5083 21.3248 86.4837 2.5329
DBA/2J f 120.8833 21.3248 162.8587 78.9079
DBA/2J m 66.0364 22.2731 109.8782 22.1945
FVB/NJ f 125.9818 22.2731 169.8237 82.1399
FVB/NJ m 149.125 21.3248 191.1004 107.1496
MOLF/EiJ f 68.55 21.3248 110.5254 26.5746
MOLF/EiJ m 72.1455 22.2731 115.9873 28.3036
SJL/J f 112.0667 21.3248 154.0421 70.0913
SJL/J m 100.7417 21.3248 142.7171 58.7663
SM/J f 121.8 23.3602 167.7818 75.8182
SM/J m 91.9667 21.3248 133.9421 49.9913


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 213.8625 15.0789 243.5436 184.1814
A/J both 244.3361 13.7651 271.4311 217.2411
AKR/J both 131.7158 15.0789 161.3969 102.0347
BALB/cByJ both 86.5845 13.366 112.894 60.275
BALB/cJ both 74.3261 15.2928 104.4283 44.224
C3H/HeJ both 129.65 16.5181 162.164 97.136
C57BL/6J both 40.1277 15.4178 70.4758 9.7795
CAST/EiJ both 31.4704 21.3248 73.4458 0.0
DBA/2J both 93.4598 15.4178 123.808 63.1117
FVB/NJ both 137.5534 15.4178 167.9016 107.2052
MOLF/EiJ both 70.3477 15.4178 100.6959 39.9996
SJL/J both 106.4042 15.0789 136.0853 76.7231
SM/J both 106.8833 15.8149 138.0131 75.7535




  GWAS USING LINEAR MIXED MODELS