Project measure / variable:   Jaxpheno1   bone_area8

ID, description, units MPD:22440   bone_area8   whole body bone area, head excluded   [cm2]  at age age 8wks  
Data set, strains Jaxpheno1   inbred   11 strains     sex: both     age: 8wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Jaxpheno1 - whole body bone area, head excluded at age age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means7.91   cm2 8.47   cm2
Median of the strain means7.96   cm2 8.67   cm2
SD of the strain means± 0.527 ± 0.797
Coefficient of variation (CV)0.0666 0.0941
Min–max range of strain means6.83   –   8.60   cm2 6.91   –   9.56   cm2
Mean sample size per strain7.8   mice 8.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 8.3586 8.3586 43.1318 < 0.0001
strain 10 72.5708 7.2571 37.4479 < 0.0001
sex:strain 10 9.7375 0.9737 5.0247 < 0.0001
Residuals 173 33.5259 0.1938


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 7.24 0.385   5 0.172 0.0532 6.8, 7.58 -1.27
B6.129P2-Apoetm1Unc/J m 7.74 0.277   5 0.124 0.0358 7.48, 8.12 -0.91
B6D2F1/J f 8.49 0.358   5 0.16 0.0421 8.12, 8.97 1.1
B6D2F1/J m 8.68 0.541   5 0.242 0.0623 8.03, 9.44 0.27
BALB/cByJ f 7.9 0.614   10 0.194 0.0777 6.99, 8.75 -0.02
BALB/cByJ m 7.59 0.43   10 0.136 0.0567 6.83, 8.3 -1.1
BALB/cJ f 7.68 0.476   10 0.151 0.0621 6.96, 8.63 -0.44
BALB/cJ m 8.6 0.482   10 0.153 0.0561 8.04, 9.73 0.17
C3H/HeJ f 8.26 0.225   5 0.101 0.0272 8.02, 8.6 0.66
C3H/HeJ m 9.16 0.479   5 0.214 0.0523 8.67, 9.74 0.87
C57BL/6J f 7.73 0.354   20 0.0793 0.0459 7.05, 8.69 -0.34
C57BL/6J m 8.12 0.291   15 0.075 0.0358 7.7, 8.95 -0.43
CBA/J f 8.23 0.437   10 0.138 0.053 7.6, 9.03 0.6
CBA/J m 8.67 0.389   15 0.1 0.0449 7.79, 9.18 0.26
DBA/2J f 6.83 0.279   10 0.0883 0.0409 6.44, 7.17 -2.05
DBA/2J m 6.91 0.451   15 0.117 0.0653 5.86, 7.54 -1.95
FVB/NJ f 8.11 0.381   5 0.17 0.047 7.64, 8.48 0.38
FVB/NJ m 9.56 0.277   5 0.124 0.029 9.21, 9.93 1.37
NOD.CB17-Prkdcscid/J f 7.96 0.507   5 0.227 0.0636 7.37, 8.68 0.09
NOD.CB17-Prkdcscid/J m 9.21 0.351   5 0.157 0.0381 8.81, 9.65 0.93
NOD/ShiLtJ f 8.6 0.565   10 0.179 0.0657 7.84, 9.54 1.31
NOD/ShiLtJ m 8.89 0.699   10 0.221 0.0787 7.66, 10.2 0.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 7.238 0.1969 7.6266 6.8494
B6.129P2-Apoetm1Unc/J m 7.736 0.1969 8.1246 7.3474
B6D2F1/J f 8.494 0.1969 8.8826 8.1054
B6D2F1/J m 8.678 0.1969 9.0666 8.2894
BALB/cByJ f 7.902 0.1392 8.1768 7.6272
BALB/cByJ m 7.592 0.1392 7.8668 7.3172
BALB/cJ f 7.676 0.1392 7.9508 7.4012
BALB/cJ m 8.595 0.1392 8.8698 8.3202
C3H/HeJ f 8.258 0.1969 8.6466 7.8694
C3H/HeJ m 9.16 0.1969 9.5486 8.7714
C57BL/6J f 7.729 0.0984 7.9233 7.5347
C57BL/6J m 8.1213 0.1137 8.3457 7.897
CBA/J f 8.23 0.1392 8.5048 7.9552
CBA/J m 8.6747 0.1137 8.899 8.4503
DBA/2J f 6.828 0.1392 7.1028 6.5532
DBA/2J m 6.9073 0.1137 7.1317 6.683
FVB/NJ f 8.114 0.1969 8.5026 7.7254
FVB/NJ m 9.56 0.1969 9.9486 9.1714
NOD.CB17-Prkdcscid/J f 7.962 0.1969 8.3506 7.5734
NOD.CB17-Prkdcscid/J m 9.21 0.1969 9.5986 8.8214
NOD/ShiLtJ f 8.598 0.1392 8.8728 8.3232
NOD/ShiLtJ m 8.886 0.1392 9.1608 8.6112


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 7.487 0.1392 7.7618 7.2122
B6D2F1/J both 8.586 0.1392 8.8608 8.3112
BALB/cByJ both 7.747 0.0984 7.9413 7.5527
BALB/cJ both 8.1355 0.0984 8.3298 7.9412
C3H/HeJ both 8.709 0.1392 8.9838 8.4342
C57BL/6J both 7.9252 0.0752 8.0736 7.7768
CBA/J both 8.4523 0.0899 8.6297 8.275
DBA/2J both 6.8677 0.0899 7.045 6.6903
FVB/NJ both 8.837 0.1392 9.1118 8.5622
NOD.CB17-Prkdcscid/J both 8.586 0.1392 8.8608 8.3112
NOD/ShiLtJ both 8.742 0.0984 8.9363 8.5477




  GWAS USING LINEAR MIXED MODELS