Project measure / variable:   Jaxpheno1   body_BMD16

ID, description, units MPD:22433   body_BMD16   bone mineral density (BMD)   [g/cm2]  at age age 16wks  
Data set, strains Jaxpheno1   inbred   9 strains     sex: both     age: 16wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Jaxpheno1 - bone mineral density (BMD) at age age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means0.0551   g/cm2 0.0560   g/cm2
Median of the strain means0.0544   g/cm2 0.0549   g/cm2
SD of the strain means± 0.00317 ± 0.00240
Coefficient of variation (CV)0.0575 0.0429
Min–max range of strain means0.0503   –   0.0607   g/cm2 0.0537   –   0.0608   g/cm2
Mean sample size per strain7.1   mice 7.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0 0.0 8.2732 0.0048
strain 8 0.0009 0.0001 20.619 < 0.0001
sex:strain 8 0.0001 0.0 3.3754 0.0016
Residuals 122 0.0006 0.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 0.0542 0.00252   5 0.00113 0.0465 0.0502, 0.0572 -0.29
B6D2F1/J m 0.0575 0.00066   5 0.000295 0.0115 0.0567, 0.0582 0.61
BALB/cByJ f 0.0564 0.00291   10 0.000919 0.0515 0.0518, 0.0612 0.4
BALB/cByJ m 0.0553 0.00145   10 0.000458 0.0262 0.0536, 0.0577 -0.3
C3H/HeJ f 0.0607 0.00143   5 0.000638 0.0235 0.0587, 0.062 1.76
C3H/HeJ m 0.0608 0.00305   5 0.00137 0.0502 0.0571, 0.0648 1.99
C57BL/6J f 0.0503 0.00229   15 0.00059 0.0454 0.046, 0.055 -1.52
C57BL/6J m 0.0547 0.00243   15 0.000628 0.0445 0.0521, 0.0614 -0.55
CBA/J f 0.0587 0.000863   10 0.000273 0.0147 0.0568, 0.0598 1.13
CBA/J m 0.0586 0.00155   10 0.000491 0.0265 0.0558, 0.0617 1.07
DBA/2J f 0.0521 0.00272   5 0.00122 0.0523 0.0478, 0.0546 -0.96
DBA/2J m 0.0537 0.000805   5 0.00036 0.015 0.0528, 0.0545 -0.97
FVB/NJ f 0.0553 0.00187   5 0.000836 0.0338 0.0532, 0.0575 0.05
FVB/NJ m 0.0549 0.00161   5 0.000718 0.0293 0.0527, 0.0563 -0.47
NOD.CB17-Prkdcscid/J f 0.0544 0.00137   5 0.000613 0.0252 0.0524, 0.0555 -0.23
NOD.CB17-Prkdcscid/J m 0.0545 0.00091   5 0.000407 0.0167 0.053, 0.0553 -0.63
NOD/ShiLtJ f 0.0541 0.00233   10 0.000738 0.0431 0.0502, 0.0578 -0.33
NOD/ShiLtJ m 0.0542 0.00434   10 0.00137 0.08 0.0478, 0.0603 -0.76


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 0.0542 0.001 0.0562 0.0521
B6D2F1/J m 0.0575 0.001 0.0595 0.0555
BALB/cByJ f 0.0564 0.0007 0.0578 0.055
BALB/cByJ m 0.0553 0.0007 0.0568 0.0539
C3H/HeJ f 0.0607 0.001 0.0627 0.0587
C3H/HeJ m 0.0608 0.001 0.0629 0.0588
C57BL/6J f 0.0503 0.0006 0.0515 0.0491
C57BL/6J m 0.0547 0.0006 0.0558 0.0535
CBA/J f 0.0587 0.0007 0.0602 0.0573
CBA/J m 0.0586 0.0007 0.06 0.0571
DBA/2J f 0.0521 0.001 0.0541 0.0501
DBA/2J m 0.0537 0.001 0.0557 0.0516
FVB/NJ f 0.0553 0.001 0.0574 0.0533
FVB/NJ m 0.0549 0.001 0.0569 0.0529
NOD.CB17-Prkdcscid/J f 0.0544 0.001 0.0564 0.0524
NOD.CB17-Prkdcscid/J m 0.0545 0.001 0.0565 0.0524
NOD/ShiLtJ f 0.0541 0.0007 0.0556 0.0527
NOD/ShiLtJ m 0.0542 0.0007 0.0557 0.0528


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 0.0558 0.0007 0.0573 0.0544
BALB/cByJ both 0.0559 0.0005 0.0569 0.0549
C3H/HeJ both 0.0608 0.0007 0.0622 0.0593
C57BL/6J both 0.0525 0.0004 0.0533 0.0517
CBA/J both 0.0587 0.0005 0.0597 0.0576
DBA/2J both 0.0529 0.0007 0.0543 0.0514
FVB/NJ both 0.0551 0.0007 0.0566 0.0537
NOD.CB17-Prkdcscid/J both 0.0544 0.0007 0.0559 0.053
NOD/ShiLtJ both 0.0542 0.0005 0.0552 0.0532




  GWAS USING LINEAR MIXED MODELS