Project measure / variable:   Jaxpheno1   body_BMC16

ID, description, units MPD:22431   body_BMC16   bone mineral content (BMC)   [g]  at age age 16wks  
Data set, strains Jaxpheno1   inbred   9 strains     sex: both     age: 16wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Jaxpheno1 - bone mineral content (BMC) at age age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means0.481   g 0.507   g
Median of the strain means0.489   g 0.517   g
SD of the strain means± 0.0555 ± 0.0489
Coefficient of variation (CV)0.115 0.0963
Min–max range of strain means0.385   –   0.558   g 0.426   –   0.577   g
Mean sample size per strain7.1   mice 7.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0229 0.0229 24.7871 < 0.0001
strain 8 0.3047 0.0381 41.2022 < 0.0001
sex:strain 8 0.0197 0.0025 2.6672 0.0098
Residuals 122 0.1128 0.0009


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 0.503 0.0103   5 0.0046 0.0204 0.488, 0.514 0.39
B6D2F1/J m 0.549 0.0216   5 0.00967 0.0394 0.518, 0.567 0.85
BALB/cByJ f 0.471 0.0303   10 0.00959 0.0644 0.426, 0.517 -0.19
BALB/cByJ m 0.461 0.0303   10 0.00958 0.0657 0.424, 0.514 -0.95
C3H/HeJ f 0.558 0.0316   5 0.0141 0.0567 0.509, 0.591 1.38
C3H/HeJ m 0.577 0.0355   5 0.0159 0.0615 0.542, 0.632 1.42
C57BL/6J f 0.404 0.0326   15 0.00842 0.0807 0.34, 0.453 -1.39
C57BL/6J m 0.462 0.0343   15 0.00886 0.0742 0.377, 0.515 -0.93
CBA/J f 0.514 0.0393   10 0.0124 0.0764 0.468, 0.597 0.59
CBA/J m 0.517 0.0345   10 0.0109 0.0667 0.469, 0.593 0.2
DBA/2J f 0.385 0.0363   5 0.0162 0.0944 0.323, 0.417 -1.73
DBA/2J m 0.426 0.016   5 0.00716 0.0376 0.405, 0.449 -1.67
FVB/NJ f 0.489 0.0376   5 0.0168 0.077 0.441, 0.543 0.14
FVB/NJ m 0.529 0.0149   5 0.00665 0.0281 0.518, 0.554 0.44
NOD.CB17-Prkdcscid/J f 0.484 0.0374   5 0.0167 0.0771 0.435, 0.534 0.05
NOD.CB17-Prkdcscid/J m 0.505 0.0176   5 0.00787 0.0349 0.483, 0.529 -0.05
NOD/ShiLtJ f 0.524 0.0169   10 0.00536 0.0323 0.501, 0.55 0.77
NOD/ShiLtJ m 0.541 0.0272   10 0.00861 0.0503 0.506, 0.587 0.69


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 0.5028 0.0136 0.5297 0.4759
B6D2F1/J m 0.549 0.0136 0.5759 0.5221
BALB/cByJ f 0.471 0.0096 0.49 0.452
BALB/cByJ m 0.4611 0.0096 0.4801 0.4421
C3H/HeJ f 0.5576 0.0136 0.5845 0.5307
C3H/HeJ m 0.5766 0.0136 0.6035 0.5497
C57BL/6J f 0.4041 0.0079 0.4196 0.3885
C57BL/6J m 0.4621 0.0079 0.4777 0.4466
CBA/J f 0.5145 0.0096 0.5335 0.4955
CBA/J m 0.5168 0.0096 0.5358 0.4978
DBA/2J f 0.3848 0.0136 0.4117 0.3579
DBA/2J m 0.426 0.0136 0.4529 0.3991
FVB/NJ f 0.4886 0.0136 0.5155 0.4617
FVB/NJ m 0.5286 0.0136 0.5555 0.5017
NOD.CB17-Prkdcscid/J f 0.4844 0.0136 0.5113 0.4575
NOD.CB17-Prkdcscid/J m 0.5046 0.0136 0.5315 0.4777
NOD/ShiLtJ f 0.5243 0.0096 0.5433 0.5053
NOD/ShiLtJ m 0.5406 0.0096 0.5596 0.5216


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 0.5259 0.0096 0.5449 0.5069
BALB/cByJ both 0.466 0.0068 0.4795 0.4526
C3H/HeJ both 0.5671 0.0096 0.5861 0.5481
C57BL/6J both 0.4331 0.0056 0.4441 0.4221
CBA/J both 0.5156 0.0068 0.5291 0.5022
DBA/2J both 0.4054 0.0096 0.4244 0.3864
FVB/NJ both 0.5086 0.0096 0.5276 0.4896
NOD.CB17-Prkdcscid/J both 0.4945 0.0096 0.5135 0.4755
NOD/ShiLtJ both 0.5324 0.0068 0.5459 0.519




  GWAS USING LINEAR MIXED MODELS