Project measure / variable:   Jaxpheno1   body_BMC8

ID, description, units MPD:22430   body_BMC8   bone mineral content (BMC)   [g]  at age 8wks  
Data set, strains Jaxpheno1   inbred   11 strains     sex: both     age: 8wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Jaxpheno1 - bone mineral content (BMC) at age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means0.378   g 0.413   g
Median of the strain means0.391   g 0.416   g
SD of the strain means± 0.0412 ± 0.0614
Coefficient of variation (CV)0.109 0.149
Min–max range of strain means0.303   –   0.423   g 0.297   –   0.502   g
Mean sample size per strain7.8   mice 8.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0445 0.0445 30.5434 < 0.0001
strain 10 0.4782 0.0478 32.8254 < 0.0001
sex:strain 10 0.0438 0.0044 3.0077 0.0016
Residuals 173 0.252 0.0015


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 0.327 0.0319   5 0.0143 0.0978 0.286, 0.36 -1.24
B6.129P2-Apoetm1Unc/J m 0.355 0.0297   5 0.0133 0.0836 0.332, 0.4 -0.95
B6D2F1/J f 0.391 0.0237   5 0.0106 0.0605 0.355, 0.42 0.32
B6D2F1/J m 0.416 0.0412   5 0.0184 0.0991 0.377, 0.479 0.04
BALB/cByJ f 0.393 0.0539   10 0.017 0.137 0.314, 0.457 0.36
BALB/cByJ m 0.367 0.0296   10 0.00935 0.0806 0.308, 0.401 -0.75
BALB/cJ f 0.374 0.0296   10 0.00936 0.0793 0.328, 0.415 -0.1
BALB/cJ m 0.413 0.0289   10 0.00915 0.07 0.386, 0.484 0.0
C3H/HeJ f 0.4 0.0278   5 0.0124 0.0694 0.366, 0.434 0.53
C3H/HeJ m 0.502 0.041   5 0.0183 0.0816 0.472, 0.556 1.45
C57BL/6J f 0.327 0.0722   20 0.0161 0.221 0.033, 0.393 -1.24
C57BL/6J m 0.373 0.0253   15 0.00653 0.0678 0.329, 0.41 -0.66
CBA/J f 0.422 0.0277   10 0.00876 0.0656 0.359, 0.462 1.07
CBA/J m 0.456 0.0297   15 0.00766 0.0651 0.403, 0.506 0.7
DBA/2J f 0.303 0.0244   10 0.00772 0.0806 0.271, 0.344 -1.82
DBA/2J m 0.297 0.0306   15 0.00791 0.103 0.227, 0.344 -1.89
FVB/NJ f 0.423 0.0146   5 0.00654 0.0346 0.408, 0.445 1.09
FVB/NJ m 0.491 0.029   5 0.013 0.0591 0.446, 0.523 1.27
NOD.CB17-Prkdcscid/J f 0.384 0.0343   5 0.0154 0.0894 0.349, 0.431 0.15
NOD.CB17-Prkdcscid/J m 0.433 0.0175   5 0.00782 0.0404 0.415, 0.459 0.32
NOD/ShiLtJ f 0.414 0.0311   10 0.00984 0.0752 0.382, 0.473 0.87
NOD/ShiLtJ m 0.443 0.0361   10 0.0114 0.0814 0.391, 0.533 0.48


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 0.3266 0.0171 0.3603 0.2929
B6.129P2-Apoetm1Unc/J m 0.3548 0.0171 0.3885 0.3211
B6D2F1/J f 0.391 0.0171 0.4247 0.3573
B6D2F1/J m 0.416 0.0171 0.4497 0.3823
BALB/cByJ f 0.3933 0.0121 0.4171 0.3695
BALB/cByJ m 0.3666 0.0121 0.3904 0.3428
BALB/cJ f 0.3736 0.0121 0.3974 0.3498
BALB/cJ m 0.4129 0.0121 0.4367 0.3891
C3H/HeJ f 0.4002 0.0171 0.4339 0.3665
C3H/HeJ m 0.5018 0.0171 0.5355 0.4681
C57BL/6J f 0.3268 0.0085 0.3436 0.31
C57BL/6J m 0.373 0.0099 0.3925 0.3535
CBA/J f 0.4223 0.0121 0.4461 0.3985
CBA/J m 0.4558 0.0099 0.4753 0.4363
DBA/2J f 0.3031 0.0121 0.3269 0.2793
DBA/2J m 0.2975 0.0099 0.3169 0.278
FVB/NJ f 0.423 0.0171 0.4567 0.3893
FVB/NJ m 0.491 0.0171 0.5247 0.4573
NOD.CB17-Prkdcscid/J f 0.3844 0.0171 0.4181 0.3507
NOD.CB17-Prkdcscid/J m 0.433 0.0171 0.4667 0.3993
NOD/ShiLtJ f 0.4139 0.0121 0.4377 0.3901
NOD/ShiLtJ m 0.4428 0.0121 0.4666 0.419


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 0.3407 0.0121 0.3645 0.3169
B6D2F1/J both 0.4035 0.0121 0.4273 0.3797
BALB/cByJ both 0.3799 0.0085 0.3968 0.3631
BALB/cJ both 0.3932 0.0085 0.4101 0.3764
C3H/HeJ both 0.451 0.0121 0.4748 0.4272
C57BL/6J both 0.3499 0.0065 0.3628 0.337
CBA/J both 0.439 0.0078 0.4544 0.4237
DBA/2J both 0.3003 0.0078 0.3157 0.2849
FVB/NJ both 0.457 0.0121 0.4808 0.4332
NOD.CB17-Prkdcscid/J both 0.4087 0.0121 0.4325 0.3849
NOD/ShiLtJ both 0.4283 0.0085 0.4452 0.4115




  GWAS USING LINEAR MIXED MODELS