Project measure / variable:   Jaxpheno1   fat_wt16

ID, description, units MPD:22415   fat_wt16   body fat tissue mass, head excluded   [g]  at age 16wks  
Data set, strains Jaxpheno1   inbred   9 strains     sex: both     age: 16wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Jaxpheno1 - body fat tissue mass, head excluded at age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means5.62   g 7.03   g
Median of the strain means5.44   g 6.52   g
SD of the strain means± 1.53 ± 2.19
Coefficient of variation (CV)0.272 0.311
Min–max range of strain means3.37   –   7.92   g 4.56   –   11.6   g
Mean sample size per strain7.1   mice 7.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 76.9603 76.9603 31.6711 < 0.0001
strain 8 472.7043 59.088 24.3162 < 0.0001
sex:strain 8 53.8225 6.7278 2.7687 0.0076
Residuals 122 296.4583 2.43


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 6.28 1.67   5 0.747 0.266 4.1, 8.2 0.43
B6D2F1/J m 7.94 1.33   5 0.595 0.168 6.1, 9.2 0.42
BALB/cByJ f 5.1 0.94   10 0.297 0.184 3.6, 6.7 -0.34
BALB/cByJ m 6.12 0.967   10 0.306 0.158 4.6, 7.6 -0.42
C3H/HeJ f 4.78 0.74   5 0.331 0.155 3.9, 5.5 -0.55
C3H/HeJ m 7.26 1.92   5 0.859 0.265 5.0, 9.6 0.1
C57BL/6J f 4.03 1.3   15 0.335 0.322 2.7, 7.3 -1.04
C57BL/6J m 4.56 0.828   15 0.214 0.182 3.1, 5.9 -1.13
CBA/J f 7.68 3.25   10 1.03 0.423 3.7, 12.4 1.35
CBA/J m 11.6 1.23   10 0.39 0.107 9.8, 13.1 2.09
DBA/2J f 7.92 1.43   5 0.64 0.181 5.5, 9.1 1.5
DBA/2J m 8.74 0.72   5 0.322 0.0823 7.8, 9.8 0.78
FVB/NJ f 5.44 2.3   5 1.03 0.423 3.9, 9.5 -0.12
FVB/NJ m 5.02 1.31   5 0.587 0.261 3.4, 6.2 -0.92
NOD.CB17-Prkdcscid/J f 5.98 1.45   5 0.647 0.242 4.8, 8.4 0.24
NOD.CB17-Prkdcscid/J m 6.52 1.86   5 0.832 0.285 4.7, 8.5 -0.23
NOD/ShiLtJ f 3.37 0.72   10 0.228 0.214 2.3, 4.2 -1.47
NOD/ShiLtJ m 5.52 2.05   10 0.65 0.372 2.3, 7.8 -0.69


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 6.28 0.6971 7.66 4.9
B6D2F1/J m 7.94 0.6971 9.32 6.56
BALB/cByJ f 5.1 0.4929 6.0758 4.1242
BALB/cByJ m 6.12 0.4929 7.0958 5.1442
C3H/HeJ f 4.78 0.6971 6.16 3.4
C3H/HeJ m 7.26 0.6971 8.64 5.88
C57BL/6J f 4.0333 0.4025 4.8301 3.2366
C57BL/6J m 4.56 0.4025 5.3568 3.7632
CBA/J f 7.68 0.4929 8.6558 6.7042
CBA/J m 11.56 0.4929 12.5358 10.5842
DBA/2J f 7.92 0.6971 9.3 6.54
DBA/2J m 8.74 0.6971 10.12 7.36
FVB/NJ f 5.44 0.6971 6.82 4.06
FVB/NJ m 5.02 0.6971 6.4 3.64
NOD.CB17-Prkdcscid/J f 5.98 0.6971 7.36 4.6
NOD.CB17-Prkdcscid/J m 6.52 0.6971 7.9 5.14
NOD/ShiLtJ f 3.37 0.4929 4.3458 2.3942
NOD/ShiLtJ m 5.52 0.4929 6.4958 4.5442


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 7.11 0.4929 8.0858 6.1342
BALB/cByJ both 5.61 0.3486 6.3 4.92
C3H/HeJ both 6.02 0.4929 6.9958 5.0442
C57BL/6J both 4.2967 0.2846 4.8601 3.7333
CBA/J both 9.62 0.3486 10.31 8.93
DBA/2J both 8.33 0.4929 9.3058 7.3542
FVB/NJ both 5.23 0.4929 6.2058 4.2542
NOD.CB17-Prkdcscid/J both 6.25 0.4929 7.2258 5.2742
NOD/ShiLtJ both 4.445 0.3486 5.135 3.755




  GWAS USING LINEAR MIXED MODELS