Project measure / variable:   Jaxpheno1   fat_wt8

ID, description, units MPD:22414   fat_wt8   body fat tissue mass, head excluded   [g]  at age 8wks  
Data set, strains Jaxpheno1   inbred   11 strains     sex: both     age: 8wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Jaxpheno1 - body fat tissue mass, head excluded at age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means4.29   g 4.64   g
Median of the strain means4.25   g 4.70   g
SD of the strain means± 0.637 ± 0.853
Coefficient of variation (CV)0.148 0.184
Min–max range of strain means3.15   –   5.24   g 3.52   –   6.22   g
Mean sample size per strain7.8   mice 8.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 22.8527 22.8527 22.2888 < 0.0001
strain 10 89.5968 8.9597 8.7386 < 0.0001
sex:strain 10 27.539 2.7539 2.6859 0.0044
Residuals 173 177.3768 1.0253


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 4.26 0.713   5 0.319 0.167 3.4, 5.0 -0.05
B6.129P2-Apoetm1Unc/J m 4.28 0.356   5 0.159 0.0833 4.0, 4.8 -0.42
B6D2F1/J f 3.96 0.754   5 0.337 0.19 3.3, 5.2 -0.52
B6D2F1/J m 4.12 0.653   5 0.292 0.159 3.3, 5.0 -0.61
BALB/cByJ f 4.14 0.776   10 0.245 0.188 3.2, 5.6 -0.24
BALB/cByJ m 5.39 0.584   10 0.185 0.108 4.4, 6.3 0.88
BALB/cJ f 4.24 0.455   10 0.144 0.107 3.8, 5.2 -0.08
BALB/cJ m 4.76 0.558   10 0.177 0.117 4.1, 5.5 0.14
C3H/HeJ f 3.46 0.709   5 0.317 0.205 3.0, 4.7 -1.31
C3H/HeJ m 5.12 0.409   5 0.183 0.0798 4.7, 5.6 0.56
C57BL/6J f 3.15 0.445   20 0.0996 0.142 2.6, 4.6 -1.8
C57BL/6J m 3.82 0.999   15 0.258 0.262 2.6, 5.6 -0.96
CBA/J f 4.56 1.31   10 0.415 0.288 2.7, 6.5 0.42
CBA/J m 5.47 1.33   15 0.343 0.243 3.3, 7.4 0.97
DBA/2J f 5.24 0.849   10 0.268 0.162 4.3, 6.6 1.49
DBA/2J m 6.22 1.85   15 0.478 0.298 3.6, 10.3 1.85
FVB/NJ f 4.98 0.646   5 0.289 0.13 4.2, 5.9 1.08
FVB/NJ m 3.66 0.654   5 0.293 0.179 2.8, 4.6 -1.15
NOD.CB17-Prkdcscid/J f 4.98 0.769   5 0.344 0.155 4.0, 5.9 1.08
NOD.CB17-Prkdcscid/J m 3.52 0.756   5 0.338 0.215 2.8, 4.8 -1.31
NOD/ShiLtJ f 4.25 1.56   10 0.492 0.366 2.5, 6.3 -0.07
NOD/ShiLtJ m 4.7 1.19   10 0.375 0.252 3.2, 6.5 0.07


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 4.26 0.4528 5.1538 3.3662
B6.129P2-Apoetm1Unc/J m 4.28 0.4528 5.1738 3.3862
B6D2F1/J f 3.96 0.4528 4.8538 3.0662
B6D2F1/J m 4.12 0.4528 5.0138 3.2262
BALB/cByJ f 4.14 0.3202 4.772 3.508
BALB/cByJ m 5.39 0.3202 6.022 4.758
BALB/cJ f 4.24 0.3202 4.872 3.608
BALB/cJ m 4.76 0.3202 5.392 4.128
C3H/HeJ f 3.46 0.4528 4.3538 2.5662
C3H/HeJ m 5.12 0.4528 6.0138 4.2262
C57BL/6J f 3.145 0.2264 3.5919 2.6981
C57BL/6J m 3.82 0.2614 4.336 3.304
CBA/J f 4.56 0.3202 5.192 3.928
CBA/J m 5.4733 0.2614 5.9894 4.9573
DBA/2J f 5.24 0.3202 5.872 4.608
DBA/2J m 6.22 0.2614 6.736 5.704
FVB/NJ f 4.98 0.4528 5.8738 4.0862
FVB/NJ m 3.66 0.4528 4.5538 2.7662
NOD.CB17-Prkdcscid/J f 4.98 0.4528 5.8738 4.0862
NOD.CB17-Prkdcscid/J m 3.52 0.4528 4.4138 2.6262
NOD/ShiLtJ f 4.25 0.3202 4.882 3.618
NOD/ShiLtJ m 4.7 0.3202 5.332 4.068


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 4.27 0.3202 4.902 3.638
B6D2F1/J both 4.04 0.3202 4.672 3.408
BALB/cByJ both 4.765 0.2264 5.2119 4.3181
BALB/cJ both 4.5 0.2264 4.9469 4.0531
C3H/HeJ both 4.29 0.3202 4.922 3.658
C57BL/6J both 3.4825 0.1729 3.8238 3.1412
CBA/J both 5.0167 0.2067 5.4246 4.6087
DBA/2J both 5.73 0.2067 6.138 5.322
FVB/NJ both 4.32 0.3202 4.952 3.688
NOD.CB17-Prkdcscid/J both 4.25 0.3202 4.882 3.618
NOD/ShiLtJ both 4.475 0.2264 4.9219 4.0281




  GWAS USING LINEAR MIXED MODELS