Project measure / variable:   Paigen4   TG

ID, description, units MPD:19704   TG   triglycerides (plasma, 4h fast)   [mg/dL]  
Data set, strains Paigen4   inbred w/CC7   43 strains     sex: both     age: 10wks
Procedure lipid profile
Ontology mappings

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  STRAIN COMPARISON PLOT
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Paigen4 - triglycerides (plasma, 4h fast)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested42 strains43 strains
Mean of the strain means105   mg/dL 136   mg/dL
Median of the strain means94.6   mg/dL 119   mg/dL
SD of the strain means± 40.3 ± 58.9
Coefficient of variation (CV)0.383 0.434
Min–max range of strain means43.1   –   220   mg/dL 67.9   –   368   mg/dL
Mean sample size per strain12.2   mice 12.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 273504.5254 273504.5254 196.4883 < 0.0001
strain 41 2255420.672 55010.2603 39.5199 < 0.0001
sex:strain 41 439262.0071 10713.7075 7.6968 < 0.0001
Residuals 968 1347420.9058 1391.9637


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 59.7 16.6   23 3.47 0.279 29.0, 91.0 -1.13
129S1/SvImJ m 98.4 30.6   17 7.43 0.311 55.0, 157.0 -0.63
A/J f 113.0 23.8   10 7.54 0.21 79.0, 140.0 0.19
A/J m 110.0 18.8   12 5.43 0.171 82.0, 144.0 -0.43
AKR/J f 157.0 52.8   28 9.98 0.336 59.0, 257.0 1.28
AKR/J m 207.0 58.3   13 16.2 0.282 128.0, 303.0 1.21
BALB/cByJ f 129.0 24.1   17 5.84 0.186 87.0, 172.0 0.59
BALB/cByJ m 139.0 34.3   16 8.57 0.247 78.0, 181.0 0.06
BALB/cJ m 135.0 18.3   5 8.2 0.136 107.0, 153.0 -0.01
BTBR T+ Itpr3tf/J f 89.9 14.9   11 4.5 0.166 71.0, 115.0 -0.38
BTBR T+ Itpr3tf/J m 93.5 11.8   10 3.73 0.126 80.0, 114.0 -0.72
BUB/BnJ f 220.0 88.6   10 28.0 0.402 126.0, 387.0 2.84
BUB/BnJ m 169.0 30.0   10 9.49 0.178 116.0, 207.0 0.57
C3H/HeJ f 78.7 27.0   11 8.15 0.343 46.0, 126.0 -0.66
C3H/HeJ m 98.1 35.1   14 9.38 0.358 69.0, 182.0 -0.64
C57BL/10J f 64.0 12.5   28 2.35 0.195 39.0, 82.0 -1.03
C57BL/10J m 69.3 15.7   10 4.96 0.226 44.0, 97.0 -1.13
C57BL/6J f 70.9 25.2   14 6.73 0.355 37.0, 116.0 -0.86
C57BL/6J m 82.6 18.0   10 5.69 0.218 62.0, 117.0 -0.9
C57BLKS/J f 79.3 7.26   10 2.3 0.0915 66.0, 89.0 -0.65
C57BLKS/J m 109.0 20.1   12 5.8 0.184 77.0, 138.0 -0.45
C57BR/cdJ f 83.1 17.7   11 5.33 0.213 58.0, 114.0 -0.55
C57BR/cdJ m 84.3 7.85   11 2.37 0.0931 67.0, 100.0 -0.87
C57L/J f 79.0 13.0   15 3.35 0.164 59.0, 101.0 -0.65
C57L/J m 79.7 26.7   14 7.15 0.335 39.0, 132.0 -0.95
C58/J f 65.0 11.0   10 3.48 0.169 48.0, 83.0 -1.0
C58/J m 87.7 29.3   18 6.91 0.334 38.0, 145.0 -0.81
CAST/EiJ f 76.8 15.3   11 4.61 0.199 57.0, 112.0 -0.71
CAST/EiJ m 260.0 135.0   13 37.3 0.518 97.0, 609.0 2.11
CBA/J f 129.0 29.2   9 9.75 0.227 78.0, 165.0 0.59
CBA/J m 153.0 19.2   10 6.09 0.126 116.0, 180.0 0.3
CE/J f 64.1 22.7   10 7.17 0.354 40.0, 108.0 -1.02
CE/J m 106.0 31.3   10 9.89 0.296 50.0, 165.0 -0.5
CZECHII/EiJ f 83.6 29.2   10 9.24 0.349 48.0, 139.0 -0.54
CZECHII/EiJ m 79.6 38.0   12 11.0 0.478 28.0, 150.0 -0.95
DBA/1J f 139.0 30.4   11 9.16 0.219 100.0, 192.0 0.83
DBA/1J m 131.0 32.1   14 8.57 0.244 95.0, 198.0 -0.08
DBA/2J f 194.0 54.4   10 17.2 0.28 104.0, 299.0 2.2
DBA/2J m 217.0 38.9   13 10.8 0.179 157.0, 275.0 1.38
FVB/NJ f 146.0 50.4   10 15.9 0.346 72.0, 225.0 1.01
FVB/NJ m 119.0 33.4   14 8.92 0.281 61.0, 185.0 -0.28
I/LnJ f 43.1 15.0   10 4.73 0.347 21.0, 66.0 -1.54
I/LnJ m 71.6 32.3   13 8.95 0.451 28.0, 136.0 -1.09
JF1/MsJ f 130.0 36.0   9 12.0 0.276 69.0, 183.0 0.61
JF1/MsJ m 180.0 37.4   11 11.3 0.208 116.0, 249.0 0.75
KK/HlJ f 113.0 20.4   9 6.79 0.181 84.0, 153.0 0.19
KK/HlJ m 216.0 47.2   10 14.9 0.218 148.0, 303.0 1.36
LP/J f 88.8 28.3   16 7.08 0.319 48.0, 142.0 -0.41
LP/J m 93.5 27.9   11 8.4 0.298 64.0, 138.0 -0.72
MA/MyJ f 107.0 44.2   10 14.0 0.413 66.0, 205.0 0.04
MA/MyJ m 146.0 40.1   10 12.7 0.276 67.0, 190.0 0.18
MOLF/EiJ f 88.9 18.3   12 5.28 0.206 60.0, 115.0 -0.41
MOLF/EiJ m 93.3 35.3   12 10.2 0.378 37.0, 140.0 -0.72
MSM/MsJ f 84.9 10.9   11 3.3 0.129 68.0, 102.0 -0.51
MSM/MsJ m 129.0 48.8   12 14.1 0.378 51.0, 186.0 -0.11
NOD/ShiLtJ f 102.0 18.1   9 6.04 0.178 80.0, 129.0 -0.08
NOD/ShiLtJ m 107.0 24.3   20 5.43 0.226 67.0, 150.0 -0.49
NON/ShiLtJ f 212.0 43.2   10 13.7 0.204 138.0, 283.0 2.65
NON/ShiLtJ m 368.0 60.9   14 16.3 0.166 253.0, 490.0 3.95
NZB/BlNJ f 59.0 11.2   11 3.38 0.19 39.0, 71.0 -1.15
NZB/BlNJ m 159.0 26.5   9 8.85 0.167 121.0, 211.0 0.4
NZW/LacJ f 85.2 10.5   10 3.31 0.123 70.0, 103.0 -0.5
NZW/LacJ m 143.0 19.1   9 6.36 0.134 121.0, 181.0 0.13
PERA/EiJ f 63.4 11.2   8 3.97 0.177 48.0, 78.0 -1.04
PERA/EiJ m 67.9 10.6   8 3.73 0.156 54.0, 82.0 -1.15
PL/J f 139.0 60.0   25 12.0 0.433 37.0, 273.0 0.83
PL/J m 188.0 44.2   23 9.22 0.235 100.0, 255.0 0.89
PWK/PhJ f 113.0 36.8   11 11.1 0.325 55.0, 174.0 0.19
PWK/PhJ m 163.0 49.1   13 13.6 0.302 90.0, 243.0 0.46
RF/J f 132.0 27.6   22 5.88 0.208 80.0, 190.0 0.66
RF/J m 170.0 44.0   21 9.6 0.258 86.0, 249.0 0.58
RIIIS/J f 117.0 28.8   13 7.98 0.246 66.0, 165.0 0.29
RIIIS/J m 117.0 24.3   15 6.28 0.208 82.0, 165.0 -0.32
SEA/GnJ f 116.0 20.1   8 7.1 0.172 92.0, 141.0 0.26
SEA/GnJ m 133.0 36.6   10 11.6 0.276 68.0, 178.0 -0.04
SJL/J f 94.9 23.1   9 7.7 0.243 67.0, 133.0 -0.26
SJL/J m 111.0 20.3   10 6.43 0.183 82.0, 148.0 -0.42
SM/J f 115.0 25.0   14 6.69 0.217 72.0, 157.0 0.24
SM/J m 193.0 80.3   11 24.2 0.416 80.0, 335.0 0.97
SPRET/EiJ f 94.3 16.9   10 5.33 0.179 64.0, 118.0 -0.27
SPRET/EiJ m 109.0 26.6   10 8.41 0.244 64.0, 148.0 -0.45
SWR/J f 141.0 16.1   9 5.38 0.114 107.0, 166.0 0.88
SWR/J m 174.0 55.8   14 14.9 0.322 97.0, 259.0 0.65
WSB/EiJ f 65.0 12.9   9 4.29 0.198 48.0, 94.0 -1.0
WSB/EiJ m 71.0 6.67   9 2.22 0.094 60.0, 81.0 -1.1


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 59.6522 7.7795 74.9187 44.3856
129S1/SvImJ m 98.4118 9.0488 116.1692 80.6543
A/J f 113.4 11.7982 136.5529 90.2471
A/J m 109.75 10.7702 130.8856 88.6144
AKR/J f 157.1071 7.0507 170.9436 143.2706
AKR/J m 206.8462 10.3477 227.1526 186.5397
BALB/cByJ f 129.2353 9.0488 146.9928 111.4778
BALB/cByJ m 138.9375 9.3273 157.2415 120.6335
BTBR T+ Itpr3tf/J f 89.9091 11.2491 111.9845 67.8337
BTBR T+ Itpr3tf/J m 93.5 11.7982 116.6529 70.3471
BUB/BnJ f 220.4 11.7982 243.5529 197.2471
BUB/BnJ m 169.1 11.7982 192.2529 145.9471
C3H/HeJ f 78.7273 11.2491 100.8027 56.6518
C3H/HeJ m 98.0714 9.9713 117.6392 78.5037
C57BL/10J f 64.0357 7.0507 77.8722 50.1992
C57BL/10J m 69.3 11.7982 92.4529 46.1471
C57BL/6J f 70.8571 9.9713 90.4249 51.2894
C57BL/6J m 82.6 11.7982 105.7529 59.4471
C57BLKS/J f 79.3 11.7982 102.4529 56.1471
C57BLKS/J m 109.1667 10.7702 130.3023 88.0311
C57BR/cdJ f 83.0909 11.2491 105.1663 61.0155
C57BR/cdJ m 84.2727 11.2491 106.3482 62.1973
C57L/J f 79.0 9.6332 97.9043 60.0957
C57L/J m 79.7143 9.9713 99.2821 60.1465
C58/J f 65.0 11.7982 88.1529 41.8471
C58/J m 87.7222 8.7938 104.9794 70.4651
CAST/EiJ f 76.8182 11.2491 98.8936 54.7428
CAST/EiJ m 259.6154 10.3477 279.9218 239.3089
CBA/J f 128.6667 12.4363 153.072 104.2614
CBA/J m 152.9 11.7982 176.0529 129.7471
CE/J f 64.1 11.7982 87.2529 40.9471
CE/J m 105.8 11.7982 128.9529 82.6471
CZECHII/EiJ f 83.6 11.7982 106.7529 60.4471
CZECHII/EiJ m 79.5833 10.7702 100.7189 58.4477
DBA/1J f 138.6364 11.2491 160.7118 116.5609
DBA/1J m 131.2857 9.9713 150.8535 111.7179
DBA/2J f 194.3 11.7982 217.4529 171.1471
DBA/2J m 216.8462 10.3477 237.1526 196.5397
FVB/NJ f 145.8 11.7982 168.9529 122.6471
FVB/NJ m 118.8571 9.9713 138.4249 99.2894
I/LnJ f 43.1 11.7982 66.2529 19.9471
I/LnJ m 71.6154 10.3477 91.9218 51.3089
JF1/MsJ f 130.4444 12.4363 154.8497 106.0391
JF1/MsJ m 179.5455 11.2491 201.6209 157.47
KK/HlJ f 112.5556 12.4363 136.9609 88.1503
KK/HlJ m 216.0 11.7982 239.1529 192.8471
LP/J f 88.8125 9.3273 107.1165 70.5085
LP/J m 93.4545 11.2491 115.53 71.3791
MA/MyJ f 107.1 11.7982 130.2529 83.9471
MA/MyJ m 145.6 11.7982 168.7529 122.4471
MOLF/EiJ f 88.9167 10.7702 110.0523 67.7811
MOLF/EiJ m 93.3333 10.7702 114.4689 72.1977
MSM/MsJ f 84.9091 11.2491 106.9845 62.8337
MSM/MsJ m 129.1667 10.7702 150.3023 108.0311
NOD/ShiLtJ f 101.8889 12.4363 126.2942 77.4836
NOD/ShiLtJ m 107.3 8.3426 123.6716 90.9284
NON/ShiLtJ f 212.1 11.7982 235.2529 188.9471
NON/ShiLtJ m 367.6429 9.9713 387.2106 348.0751
NZB/BlNJ f 59.0 11.2491 81.0754 36.9246
NZB/BlNJ m 159.1111 12.4363 183.5164 134.7058
NZW/LacJ f 85.2 11.7982 108.3529 62.0471
NZW/LacJ m 142.5556 12.4363 166.9609 118.1503
PERA/EiJ f 63.375 13.1907 89.2607 37.4893
PERA/EiJ m 67.875 13.1907 93.7607 41.9893
PL/J f 138.72 7.4618 153.3632 124.0768
PL/J m 188.1739 7.7795 203.4405 172.9073
PWK/PhJ f 113.1818 11.2491 135.2572 91.1064
PWK/PhJ m 162.6154 10.3477 182.9218 142.3089
RF/J f 132.4545 7.9543 148.0642 116.8449
RF/J m 170.2381 8.1415 186.2151 154.2611
RIIIS/J f 116.8462 10.3477 137.1526 96.5397
RIIIS/J m 116.7333 9.6332 135.6376 97.8291
SEA/GnJ f 116.5 13.1907 142.3857 90.6143
SEA/GnJ m 132.7 11.7982 155.8529 109.5471
SJL/J f 94.8889 12.4363 119.2942 70.4836
SJL/J m 110.8 11.7982 133.9529 87.6471
SM/J f 115.3571 9.9713 134.9249 95.7894
SM/J m 193.0 11.2491 215.0754 170.9246
SPRET/EiJ f 94.3 11.7982 117.4529 71.1471
SPRET/EiJ m 108.9 11.7982 132.0529 85.7471
SWR/J f 141.1111 12.4363 165.5164 116.7058
SWR/J m 173.6429 9.9713 193.2106 154.0751
WSB/EiJ f 65.0 12.4363 89.4053 40.5947
WSB/EiJ m 71.0 12.4363 95.4053 46.5947


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 79.032 5.9666 90.7409 67.323
A/J both 111.575 7.9874 127.2496 95.9004
AKR/J both 181.9766 6.2607 194.2628 169.6905
BALB/cByJ both 134.0864 6.4977 146.8375 121.3353
BTBR T+ Itpr3tf/J both 91.7045 8.1507 107.6997 75.7094
BUB/BnJ both 194.75 8.3426 211.1216 178.3784
C3H/HeJ both 88.3994 7.5161 103.1491 73.6496
C57BL/10J both 66.6679 6.8722 80.154 53.1817
C57BL/6J both 76.7286 7.7237 91.8857 61.5714
C57BLKS/J both 94.2333 7.9874 109.9079 78.5587
C57BR/cdJ both 83.6818 7.9543 99.2915 68.0721
C57L/J both 79.3571 6.9322 92.9611 65.7532
C58/J both 76.3611 7.3574 90.7995 61.9227
CAST/EiJ both 168.2168 7.6423 183.2141 153.2195
CBA/J both 140.7833 8.5712 157.6035 123.9631
CE/J both 84.95 8.3426 101.3216 68.5784
CZECHII/EiJ both 81.5917 7.9874 97.2663 65.9171
DBA/1J both 134.961 7.5161 149.7108 120.2113
DBA/2J both 205.5731 7.8465 220.9712 190.175
FVB/NJ both 132.3286 7.7237 147.4857 117.1714
I/LnJ both 57.3577 7.8465 72.7558 41.9596
JF1/MsJ both 154.9949 8.3846 171.449 138.5409
KK/HlJ both 164.2778 8.5712 181.098 147.4576
LP/J both 91.1335 7.3065 105.4719 76.7951
MA/MyJ both 126.35 8.3426 142.7216 109.9784
MOLF/EiJ both 91.125 7.6157 106.0701 76.1799
MSM/MsJ both 107.0379 7.7868 122.3189 91.7569
NOD/ShiLtJ both 104.5944 7.4877 119.2884 89.9005
NON/ShiLtJ both 289.8714 7.7237 305.0286 274.7143
NZB/BlNJ both 109.0556 8.3846 125.5096 92.6015
NZW/LacJ both 113.8778 8.5712 130.698 97.0576
PERA/EiJ both 65.625 9.3273 83.929 47.321
PL/J both 163.447 5.3898 174.0239 152.87
PWK/PhJ both 137.8986 7.6423 152.8959 122.9013
RF/J both 151.3463 5.6911 162.5147 140.178
RIIIS/J both 116.7897 7.0688 130.6617 102.9178
SEA/GnJ both 124.6 8.8486 141.9647 107.2353
SJL/J both 102.8444 8.5712 119.6646 86.0243
SM/J both 154.1786 7.5161 168.9283 139.4288
SPRET/EiJ both 101.6 8.3426 117.9716 85.2284
SWR/J both 157.377 7.9701 173.0176 141.7364
WSB/EiJ both 68.0 8.7938 85.2572 50.7428




  GWAS USING LINEAR MIXED MODELS