Project measure / variable:   Project1202   CFM.Bin2_22_Ntg_Chow

ID, description, units MPD:130491   CFM.Bin2_22_Ntg_Chow   CFM.Bin2    22 Ntg Chow  
Data set, strains Project1202   F1 AD-BXD   25 strains     sex: both
Procedure None
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  STRAIN COMPARISON PLOT
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Project1202 - CFM.Bin2 22 Ntg Chow



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains19 strains
Mean of the strain means41.095   None 46.809   None
Median of the strain means40.685   None 43.45   None
SD of the strain means± 16.012 ± 22.163
Coefficient of variation (CV)0.3896 0.4735
Min–max range of strain means16.075   –   70.75   None 12.859   –   85.14   None
Mean sample size per strain3.5   mice 3.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.7627 0.7627 0.0021 0.9635
strain 8 9396.0077 1174.501 3.2421 0.0034
sex:strain 8 5235.4151 654.4269 1.8065 0.0903
Residuals 70 25358.8742 362.2696


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x BXD113)F1 f 40.685 6.7387   2   4.765 0.1656 35.92, 45.45 -0.03
(B6.5XFAD x BXD124)F1 m 78.94 0.0   1   0.0 0.0 78.94, 78.94 1.45
(B6.5XFAD x BXD125)F1 f 69.62 0.0   1   0.0 0.0 69.62, 69.62 1.78
(B6.5XFAD x BXD125)F1 m 59.46 49.978   2   35.34 0.8405 24.12, 94.8 0.57
(B6.5XFAD x BXD14)F1-ADtg f 49.22 0.0   1   0.0 0.0 49.22, 49.22 0.51
(B6.5XFAD x BXD14)F1-ADtg m 41.687 8.645   3 4.9912 0.2074 33.04, 50.33 -0.23
(B6.5XFAD x BXD152)F1 f 64.28 19.215   5 8.593 0.2989 42.62, 85.65 1.45
(B6.5XFAD x BXD152)F1 m 85.14 0.0   1   0.0 0.0 85.14, 85.14 1.73
(B6.5XFAD x BXD161)F1 f 36.363 30.751   3 17.754 0.8457 15.08, 71.62 -0.3
(B6.5XFAD x BXD161)F1 m 42.549 21.42   8 7.5732 0.5034 4.78, 77.96 -0.19
(B6.5XFAD x BXD169)F1 f 53.22 17.544   4 8.7722 0.3296 32.43, 70.48 0.76
(B6.5XFAD x BXD169)F1 m 61.3 12.373   6 5.0512 0.2018 39.09, 74.06 0.65
(B6.5XFAD x BXD172)F1 f 16.075 13.951   2   9.865 0.8679 6.21, 25.94 -1.56
(B6.5XFAD x BXD197)F1 f 28.48 0.0   1   0.0 0.0 28.48, 28.48 -0.79
(B6.5XFAD x BXD197)F1 m 51.23 20.791   3 12.004 0.4058 27.23, 63.75 0.2
(B6.5XFAD x BXD28)F1 f 44.565 33.863   2   23.945 0.7599 20.62, 68.51 0.22
(B6.5XFAD x BXD50)F1 f 39.135 31.516   2   22.285 0.8053 16.85, 61.42 -0.12
(B6.5XFAD x BXD50)F1 m 43.45 11.838   4 5.9188 0.2724 26.82, 53.43 -0.15
(B6.5XFAD x BXD60)F1-ADtg f 70.75 26.879   3 15.518 0.3799 39.71, 86.28 1.85
(B6.5XFAD x BXD60)F1-ADtg m 25.16 0.0   1   0.0 0.0 25.16, 25.16 -0.98
(B6.5XFAD x BXD61)F1-ADtg f 42.575 19.031   11 5.7382 0.447 12.5, 73.39 0.09
(B6.5XFAD x BXD61)F1-ADtg m 42.966 18.777   9 6.2591 0.437 20.83, 68.74 -0.17
(B6.5XFAD x BXD65)F1-ADtg f 19.96 0.0   1   0.0 0.0 19.96, 19.96 -1.32
(B6.5XFAD x BXD65)F1-ADtg m 14.41 0.0   1   0.0 0.0 14.41, 14.41 -1.46
(B6.5XFAD x BXD66)F1-ADtg f 41.983 15.871   3 9.1633 0.378 32.82, 60.31 0.06
(B6.5XFAD x BXD66)F1-ADtg m 28.233 7.8399   3 4.5264 0.2777 19.29, 33.92 -0.84
(B6.5XFAD x BXD68)F1-ADtg f 24.781 17.731   8 6.269 0.7155 3.33, 55.62 -1.02
(B6.5XFAD x BXD68)F1-ADtg m 82.48 0.0   1   0.0 0.0 82.48, 82.48 1.61
(B6.5XFAD x BXD73a)F1 f 55.39 10.492   4 5.2462 0.1894 48.75, 70.83 0.89
(B6.5XFAD x BXD73)F1 f 26.16 0.0   1   0.0 0.0 26.16, 26.16 -0.93
(B6.5XFAD x BXD73)F1 m 39.437 20.647   7 7.804 0.5236 13.53, 65.63 -0.33
(B6.5XFAD x BXD75)F1-ADtg m 15.63 8.6267   2   6.1 0.5519 9.53, 21.73 -1.41
(B6.5XFAD x BXD81)F1-ADtg f 47.34 25.102   4 12.551 0.5303 13.12, 71.25 0.39
(B6.5XFAD x BXD81)F1-ADtg m 48.203 12.746   4 6.3729 0.2644 32.92, 62.5 0.06
(B6.5XFAD x BXD87)F1-ADtg f 23.947 3.0452   3 1.7582 0.1272 21.29, 27.27 -1.07
(B6.5XFAD x BXD89)F1-ADtg f 23.544 18.642   5 8.3369 0.7918 9.53, 55.65 -1.1
(B6.5XFAD x D2)F1-ADtg f 26.44 20.383   8 7.2065 0.7709 4.21, 59.42 -0.92
(B6.5XFAD x D2)F1-ADtg m 70.51 14.114   2   9.98 0.2002 60.53, 80.49 1.07
(B6 x DBA/2J-Gpnmb+/SjJ)F1 f 40.245 27.443   2   19.405 0.6819 20.84, 59.65 -0.05
(B6 x DBA/2J-Gpnmb+/SjJ)F1 m 12.859 7.208   7 2.7244 0.5606 4.43, 24.61 -1.53
C57BL/6J f 60.42 27.881   4 13.94 0.4614 25.94, 86.03 1.21
C57BL/6J m 45.733 20.016   4 10.008 0.4377 18.18, 60.98 -0.05


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 47.34 9.5166910128 66.3204417371 28.3595582629
129S1/SvImJ 2 48.2025 9.5166910128 67.1829417371 29.2220582629
A/J 1 26.44 6.7293167496 39.8611990623 13.0188009377
A/J 2 70.51 13.4586334992 97.3523981245 43.6676018755
BALB/cJ 1 40.245 13.4586334992 67.0873981245 13.4026018755
BALB/cJ 2 12.8585714286 7.1939422069 27.2064367459 -1.4892938888
BTBR T+ Itpr3tf/J 1 42.5745454545 5.7387806064 54.0201824722 31.1289084369
BTBR T+ Itpr3tf/J 2 42.9655555556 6.3444606752 55.6191833803 30.3119277308
C3H/HeJ 1 39.135 13.4586334992 65.9773981245 12.2926018755
C3H/HeJ 2 43.45 9.5166910128 62.4304417371 24.4695582629
C57BL/6J 1 36.3633333333 10.988928236 58.2800596259 14.4466070408
C57BL/6J 2 42.54875 6.7293167496 55.9699490623 29.1275509377
CAST/EiJ 1 41.9833333333 10.988928236 63.9000596259 20.0666070408
CAST/EiJ 2 28.2333333333 10.988928236 50.1500596259 6.3166070408
DBA/2J 1 53.2225 9.5166910128 72.2029417371 34.2420582629
DBA/2J 2 61.3 7.7703456737 76.7974657829 45.8025342171
FVB/NJ 1 60.42 9.5166910128 79.4004417371 41.4395582629
FVB/NJ 2 45.7325 9.5166910128 64.7129417371 26.7520582629


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 47.77125 6.7293167496 61.1924490623 34.3500509377
A/J both 48.475 7.5236048471 63.4803567214 33.4696432786
BALB/cJ both 26.5517857143 7.6303279769 41.7699950064 11.3335764221
BTBR T+ Itpr3tf/J both 42.7700505051 4.2774345146 51.3011246442 34.2389763659
C3H/HeJ both 41.2925 8.241696177 57.7300447194 24.8549552806
C57BL/6J both 39.4560416667 6.4428302727 52.3058614675 26.6062218659
CAST/EiJ both 35.1083333333 7.7703456737 50.6057991162 19.6108675505
DBA/2J both 57.26125 6.1429976339 69.5130724586 45.0094275414
FVB/NJ both 53.07625 6.7293167496 66.4974490623 39.6550509377




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA