Project measure / variable:   Project1202   CFM.Bin2_3_Ntg_Chow

ID, description, units MPD:130488   CFM.Bin2_3_Ntg_Chow   CFM.Bin2    3 Ntg Chow  
Data set, strains Project1202   F1 AD-BXD   44 strains     sex: both
Procedure None
Ontology mappings


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  STRAIN COMPARISON PLOT
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Project1202 - CFM.Bin2 3 Ntg Chow



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested43 strains35 strains
Mean of the strain means46.573   None 44.278   None
Median of the strain means46.638   None 45.5   None
SD of the strain means± 18.791 ± 19.472
Coefficient of variation (CV)0.4035 0.4398
Min–max range of strain means5.1   –   91.13   None 7.827   –   84.81   None
Mean sample size per strain6.2   mice 6.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4058.8633 4058.8633 9.3057 0.0024
strain 32 94163.0943 2942.5967 6.7465 < 0.0001
sex:strain 32 25401.3858 793.7933 1.8199 0.005
Residuals 391 170541.8647 436.1685


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x BXD100)F1-ADtg f 51.71 12.062   3 6.964 0.2333 39.25, 63.33 0.27
(B6.5XFAD x BXD113)F1 f 54.04 26.658   10 8.43 0.4933 4.43, 75.83 0.4
(B6.5XFAD x BXD113)F1 m 49.887 15.084   3 8.7088 0.3024 32.59, 60.31 0.29
(B6.5XFAD x BXD124)F1 f 68.96 20.983   7 7.9307 0.3043 41.46, 91.57 1.19
(B6.5XFAD x BXD124)F1 m 64.78 13.691   7 5.1748 0.2114 40.58, 77.61 1.05
(B6.5XFAD x BXD125)F1 f 46.638 23.699   6 9.6751 0.5081 23.73, 83.37 0.0
(B6.5XFAD x BXD125)F1 m 41.908 32.226   5 14.412 0.769 -0.12
(B6.5XFAD x BXD12)F1 f 36.362 14.991   6 6.1202 0.4123 21.06, 61.42 -0.54
(B6.5XFAD x BXD12)F1 m 59.34 32.333   5 14.46 0.5449 20.18, 90.24 0.77
(B6.5XFAD x BXD14)F1-ADtg f 39.688 23.241   6 9.488 0.5856 9.53, 80.93 -0.37
(B6.5XFAD x BXD14)F1-ADtg m 49.351 32.762   7 12.383 0.6639 0.89, 81.82 0.26
(B6.5XFAD x BXD152)F1 f 68.27 29.726   8 10.51 0.4355 9.76, 99.78 1.15
(B6.5XFAD x BXD152)F1 m 74.28 9.3264   5 4.1709 0.1256 63.19, 87.8 1.54
(B6.5XFAD x BXD154)F1 f 57.21 30.502   7 11.529 0.5332 14.19, 98.67 0.57
(B6.5XFAD x BXD154)F1 m 45.955 31.156   8 11.015 0.678 5.99, 97.12 0.09
(B6.5XFAD x BXD161)F1 f 38.457 16.377   9 5.4591 0.4259 23.5, 77.38 -0.43
(B6.5XFAD x BXD161)F1 m 21.464 17.325   5 7.748 0.8072 9.98, 52.11 -1.17
(B6.5XFAD x BXD169)F1 f 51.19 19.119   8 6.7595 0.3735 21.06, 76.27 0.25
(B6.5XFAD x BXD169)F1 m 43.807 15.311   7 5.7871 0.3495 21.06, 65.63 -0.02
(B6.5XFAD x BXD16)F1-ADtg f 75.23 10.009   11 3.0178 0.133 59.2, 88.03 1.53
(B6.5XFAD x BXD16)F1-ADtg m 84.81 6.1165   2   4.325 0.0721 80.49, 89.14 2.08
(B6.5XFAD x BXD172)F1 f 5.32 0.0   1   0.0 0.0 5.32, 5.32 -2.2
(B6.5XFAD x BXD19)F1 f 60.67 21.682   8 7.6656 0.3574 10.42, 76.5 0.75
(B6.5XFAD x BXD19)F1 m 21.686 19.208   5 8.5899 0.8857 8.65, 54.32 -1.16
(B6.5XFAD x BXD22)F1-ADtg m 65.85 0.62933   2   0.445 0.0096 65.41, 66.3 1.11
(B6.5XFAD x BXD28)F1 f 52.66 28.904   11 8.7149 0.5489 8.2, 97.56 0.32
(B6.5XFAD x BXD28)F1 m 48.781 34.01   7 12.855 0.6972 0.89, 90.91 0.23
(B6.5XFAD x BXD31)F1 f 66.52 0.0   1   0.0 0.0 66.52, 66.52 1.06
(B6.5XFAD x BXD33)F1 f 91.13 0.0   1   0.0 0.0 91.13, 91.13 2.37
(B6.5XFAD x BXD34)F1-ADtg f 64.19 35.278   2   24.945 0.5495 39.25, 89.14 0.94
(B6.5XFAD x BXD38)F1 f 30.907 18.838   10 5.957 0.6095 6.43, 63.19 -0.83
(B6.5XFAD x BXD38)F1 m 48.369 13.348   7 5.0449 0.276 28.38, 65.41 0.21
(B6.5XFAD x BXD39)F1 f 62.39 20.423   8 7.2208 0.3274 32.37, 91.8 0.84
(B6.5XFAD x BXD39)F1 m 65.85 23.559   7 8.9044 0.3577 27.49, 92.02 1.11
(B6.5XFAD x BXD48a)F1 f 68.66 22.183   3 12.807 0.3231 44.35, 87.8 1.18
(B6.5XFAD x BXD48a)F1 m 50.44 27.935   6 11.404 0.5538 25.06, 99.78 0.32
(B6.5XFAD x BXD49)F1 f 58.76 29.972   3 17.304 0.5101 24.61, 80.71 0.65
(B6.5XFAD x BXD50)F1 f 37.757 16.702   7 6.3128 0.4424 3.77, 58.31 -0.47
(B6.5XFAD x BXD50)F1 m 39.21 17.265   6 7.0486 0.4403 23.73, 70.29 -0.26
(B6.5XFAD x BXD55)F1-ADtg f 30.126 14.431   8 5.1022 0.479 9.53, 47.45 -0.88
(B6.5XFAD x BXD55)F1-ADtg m 33.88 15.28   4 7.64 0.451 20.89, 55.65 -0.53
(B6.5XFAD x BXD60)F1-ADtg f 37.915 20.635   4 10.317 0.5442 16.85, 65.63 -0.46
(B6.5XFAD x BXD60)F1-ADtg m 45.5 15.849   5 7.0879 0.3483 26.39, 60.75 0.06
(B6.5XFAD x BXD61)F1-ADtg f 41.633 16.307   8 5.7655 0.3917 16.19, 64.97 -0.26
(B6.5XFAD x BXD61)F1-ADtg m 16.241 9.4897   8 3.3551 0.5843 4.21, 30.38 -1.44
(B6.5XFAD x BXD62)F1-ADtg f 69.65 15.885   10 5.0234 0.2281 48.12, 92.68 1.23
(B6.5XFAD x BXD62)F1-ADtg m 75.61 14.863   4 7.4314 0.1966 60.98, 96.23 1.61
(B6.5XFAD x BXD64)F1 f 31.265 25.081   2   17.735 0.8022 13.53, 49.0 -0.81
(B6.5XFAD x BXD65)F1-ADtg f 56.28 26.426   6 10.788 0.4695 26.61, 94.24 0.52
(B6.5XFAD x BXD65)F1-ADtg m 40.058 23.072   6 9.419 0.576 3.77, 68.51 -0.22
(B6.5XFAD x BXD66)F1-ADtg f 23.43 8.2894   6 3.3841 0.3538 15.96, 35.48 -1.23
(B6.5XFAD x BXD66)F1-ADtg m 25.75 11.825   8 4.1809 0.4592 9.09, 41.69 -0.95
(B6.5XFAD x BXD68)F1-ADtg f 23.835 15.844   4 7.9218 0.6647 6.87, 39.25 -1.21
(B6.5XFAD x BXD68)F1-ADtg m 56.82 15.441   4 7.7204 0.2718 37.25, 74.28 0.64
(B6.5XFAD x BXD73)F1 f 25.563 19.114   7 7.2243 0.7477 4.66, 59.2 -1.12
(B6.5XFAD x BXD73)F1 m 45.898 26.482   13 7.3448 0.577 0.08
(B6.5XFAD x BXD74)F1 f 55.16 23.817   9 7.9391 0.4318 21.29, 91.13 0.46
(B6.5XFAD x BXD74)F1 m 78.16 15.955   4 7.9776 0.2041 54.55, 89.58 1.74
(B6.5XFAD x BXD75)F1-ADtg f 30.126 20.001   7 7.5596 0.6639 2.66, 63.64 -0.88
(B6.5XFAD x BXD75)F1-ADtg m 7.827 6.1951   10 1.9591 0.7915 0.89, 17.96 -1.87
(B6.5XFAD x BXD77)F1-ADtg f 38.84 23.811   6 9.7207 0.613 16.63, 75.17 -0.41
(B6.5XFAD x BXD77)F1-ADtg m 25.692 17.755   8 6.2773 0.691 0.89, 43.9 -0.95
(B6.5XFAD x BXD78)F1 f 30.523 22.311   3 12.881 0.7309 10.86, 54.77 -0.85
(B6.5XFAD x BXD83)F1 f 44.723 13.284   10 4.2006 0.297 29.71, 69.62 -0.1
(B6.5XFAD x BXD83)F1 m 33.565 21.803   6 8.9009 0.6496 5.32, 65.19 -0.55
(B6.5XFAD x BXD87)F1-ADtg f 50.41 22.768   11 6.8648 0.4516 14.19, 83.81 0.2
(B6.5XFAD x BXD87)F1-ADtg m 54.35 28.654   8 10.131 0.5272 15.52, 92.24 0.52
(B6.5XFAD x BXD98)F1 f 71.84 0.0   1   0.0 0.0 71.84, 71.84 1.34
(B6.5XFAD x BXD99)F1-ADtg f 45.743 24.126   10 7.6294 0.5274 12.86, 90.91 -0.04
(B6.5XFAD x BXD99)F1-ADtg m 22.262 15.862   5 7.0937 0.7125 3.55, 42.13 -1.13
(B6.5XFAD x D2)F1-ADtg f 37.346 23.086   7 8.7257 0.6182 7.76, 78.94 -0.49
(B6.5XFAD x D2)F1-ADtg m 15.522 10.304   5 4.6083 0.6639 3.77, 31.04 -1.48
(B6 x DBA/2J-Gpnmb+/SjJ)F1 f 5.1 0.0   1   0.0 0.0 5.1, 5.1 -2.21
(B6 x DBA/2J-Gpnmb+/SjJ)F1 m 40.633 25.042   4 12.521 0.6163 26.39, 78.05 -0.19
C57BL/6J f 49.852 15.61   6 6.3729 0.3131 25.28, 70.95 0.17
C57BL/6J m 40.082 15.586   13 4.3228 0.3889 21.73, 69.18 -0.22
DBA/2J f 16.542 12.515   5 5.5967 0.7565 3.77, 37.47 -1.6
DBA/2J m 16.098 12.246   5 5.4767 0.7607 2.44, 30.16 -1.45


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 30.12625 7.383837517 44.643241382 15.609258618
129S1/SvImJ 2 33.88 10.4423231588 54.4101260973 13.3498739027
A/J 1 37.915 10.4423231588 58.4451260973 17.3848739027
A/J 2 45.5 9.3398977705 63.8627030161 27.1372969839
AKR/J 1 54.035 6.6043050491 67.0193918236 41.0506081764
AKR/J 2 49.8866666667 12.0577561734 73.5928143242 26.1805190091
ALR/LtJ 1 57.2071428571 7.8936543394 72.7264594395 41.6878262748
ALR/LtJ 2 45.955 7.383837517 60.471991382 31.438008618
ALS/LtJ 1 38.4566666667 6.9615487726 52.1434173982 24.7699159351
ALS/LtJ 2 21.464 9.3398977705 39.8267030161 3.1012969839
BALB/cJ 1 41.6325 7.383837517 56.149491382 27.115508618
BALB/cJ 2 16.24125 7.383837517 30.758241382 1.724258618
BPH/2J 1 51.19 7.383837517 65.706991382 36.673008618
BPH/2J 2 43.8071428571 7.8936543394 59.3264594395 28.2878262748
BPL/1J 1 37.7571428571 7.8936543394 53.2764594395 22.2378262748
BPL/1J 2 39.21 8.5261211561 55.9727777645 22.4472222355
BPN/3J 1 62.39 7.383837517 76.906991382 47.873008618
BPN/3J 2 65.8542857143 7.8936543394 81.3736022967 50.3349691319
BTBR T+ Itpr3tf/J 1 39.6883333333 8.5261211561 56.4511110978 22.9255555689
BTBR T+ Itpr3tf/J 2 49.3514285714 7.8936543394 64.8707451538 33.8321119891
BUB/BnJ 1 60.67 7.383837517 75.186991382 46.153008618
BUB/BnJ 2 21.686 9.3398977705 40.0487030161 3.3232969839
C3H/HeJ 1 69.647 6.6043050491 82.6313918236 56.6626081764
C3H/HeJ 2 75.61 10.4423231588 96.1401260973 55.0798739027
C57BL/6J 1 56.2816666667 8.5261211561 73.0444444311 39.5188889022
C57BL/6J 2 40.0583333333 8.5261211561 56.8211110978 23.2955555689
C57BR/cdJ 1 49.8516666667 8.5261211561 66.6144444311 33.0888889022
C57BR/cdJ 2 40.0815384615 5.7923587053 51.4696034363 28.6934734868
C58/J 1 68.6633333333 12.0577561734 92.3694809909 44.9571856758
C58/J 2 50.4433333333 8.5261211561 67.2061110978 33.6805555689
CAST/EiJ 1 75.2272727273 6.2969577923 87.6074045752 62.8471408794
CAST/EiJ 2 84.815 14.7676750339 113.8489827641 55.7810172359
CBA/J 1 36.3616666667 8.5261211561 53.1244444311 19.5988889022
CBA/J 2 59.336 9.3398977705 77.6987030161 40.9732969839
CE/J 1 52.6563636364 6.2969577923 65.0364954843 40.2762317885
CE/J 2 48.7814285714 7.8936543394 64.3007451538 33.2621119891
DBA/2J 1 23.43 8.5261211561 40.1927777645 6.6672222355
DBA/2J 2 25.75 7.383837517 40.266991382 11.233008618
FVB/NJ 1 23.835 10.4423231588 44.3651260973 3.3048739027
FVB/NJ 2 56.8175 10.4423231588 77.3476260973 36.2873739027
I/LnJ 1 55.1611111111 6.9615487726 68.8478618427 41.4743603796
I/LnJ 2 78.16 10.4423231588 98.6901260973 57.6298739027
KK/HlJ 1 46.6383333333 8.5261211561 63.4011110978 29.8755555689
KK/HlJ 2 41.908 9.3398977705 60.2707030161 23.5452969839
LP/J 1 30.1257142857 7.8936543394 45.6450308681 14.6063977033
LP/J 2 7.827 6.6043050491 20.8113918236 -5.1573918236
MA/MyJ 1 68.265 7.383837517 82.781991382 53.748008618
MA/MyJ 2 74.276 9.3398977705 92.6387030161 55.9132969839
NOD/ShiLtJ 1 45.743 6.6043050491 58.7273918236 32.7586081764
NOD/ShiLtJ 2 22.262 9.3398977705 40.6247030161 3.8992969839
NZB/BlNJ 1 38.84 8.5261211561 55.6027777645 22.0772222355
NZB/BlNJ 2 25.6925 7.383837517 40.209491382 11.175508618
PL/J 1 37.3457142857 7.8936543394 52.8650308681 21.8263977033
PL/J 2 15.522 9.3398977705 33.8847030161 -2.8407030161
RBF/DnJ 1 16.542 9.3398977705 34.9047030161 -1.8207030161
RBF/DnJ 2 16.098 9.3398977705 34.4607030161 -2.2647030161
RIIIS/J 1 30.907 6.6043050491 43.8913918236 17.9226081764
RIIIS/J 2 48.3685714286 7.8936543394 63.8878880109 32.8492548462
SEA/GnJ 1 25.5628571429 7.8936543394 41.0821737252 10.0435405605
SEA/GnJ 2 45.8984615385 5.7923587053 57.2865265132 34.5103965637
SJL/J 1 68.9557142857 7.8936543394 84.4750308681 53.4363977033
SJL/J 2 64.7771428571 7.8936543394 80.2964594395 49.2578262748
SM/J 1 44.723 6.6043050491 57.7073918236 31.7386081764
SM/J 2 33.565 8.5261211561 50.3277777645 16.8022222355
SWR/J 1 50.4127272727 6.2969577923 62.7928591206 38.0325954248
SWR/J 2 54.35125 7.383837517 68.868241382 39.834258618


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 32.003125 6.3945908671 44.5752083234 19.4310416766
A/J both 41.7075 7.0049233279 55.4795272621 27.9354727379
AKR/J both 51.9608333333 6.8739786354 65.4754168248 38.4462498419
ALR/LtJ both 51.5810714286 5.4044156786 62.2064211401 40.955721717
ALS/LtJ both 29.9603333333 5.8244495808 41.4114905636 18.5091761031
BALB/cJ both 28.936875 5.2211615794 39.2019380487 18.6718119513
BPH/2J both 47.4985714286 5.4044156786 58.1239211401 36.873221717
BPL/1J both 38.4835714286 5.8095722906 49.9054791673 27.0616636899
BPN/3J both 64.1221428571 5.4044156786 74.7474925687 53.4967931456
BTBR T+ Itpr3tf/J both 44.5198809524 5.8095722906 55.9417886911 33.0979732137
BUB/BnJ both 41.178 5.9530401233 52.8819726252 29.4740273748
C3H/HeJ both 72.6285 6.1777616929 84.7742863949 60.4827136051
C57BL/6J both 48.17 6.0288780867 60.0230738288 36.3169261712
C57BR/cdJ both 44.9666025641 5.15378893 55.099207637 34.8339974912
C58/J both 59.5533333333 7.383837517 74.0703247154 45.0363419513
CAST/EiJ both 80.0211363636 8.0270776648 95.802769832 64.2395028953
CBA/J both 47.8488333333 6.3231406819 60.280442043 35.4172246237
CE/J both 50.7188961039 5.0487982795 60.645084342 40.7927078658
DBA/2J both 24.59 5.6394990568 35.6775353119 13.5024646881
FVB/NJ both 40.32625 7.383837517 54.843241382 25.809258618
I/LnJ both 66.6605555556 6.275055264 78.9976259448 54.3234851663
KK/HlJ both 44.2731666667 6.3231406819 56.7047753763 31.841557957
LP/J both 18.9763571429 5.1460330356 29.093713742 8.8590005438
MA/MyJ both 71.2705 5.9530401233 82.9744726252 59.5665273748
NOD/ShiLtJ both 34.0025 5.7194959469 45.2473131719 22.7576868281
NZB/BlNJ both 32.26625 5.6394990568 43.3537853119 21.1787146881
PL/J both 26.4338571429 6.1143983595 38.4550680765 14.4126462092
RBF/DnJ both 16.32 6.6043050491 29.3043918236 3.3356081764
RIIIS/J both 39.6377857143 5.1460330356 49.7551423134 29.5204291152
SEA/GnJ both 35.7306593407 4.8954366047 45.3553309072 26.1059877742
SJL/J both 66.8664285714 5.5816565118 77.8402425662 55.8926145766
SM/J both 39.144 5.392392492 49.7457115294 28.5422884706
SWR/J both 52.3819886364 4.8521318489 61.9215209016 42.8424563711




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA