Project measure / variable:   Project1202   CFM.Bin2_14_5XFAD_Chow

ID, description, units MPD:130487   CFM.Bin2_14_5XFAD_Chow   CFM.Bin2    14 5XFAD Chow  
Data set, strains Project1202   F1 AD-BXD   49 strains     sex: both
Procedure None
Ontology mappings


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  STRAIN COMPARISON PLOT
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Project1202 - CFM.Bin2 14 5XFAD Chow



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested49 strains39 strains
Mean of the strain means35.918   None 48.932   None
Median of the strain means38.076   None 53.41   None
SD of the strain means± 15.132 ± 13.332
Coefficient of variation (CV)0.4213 0.2725
Min–max range of strain means0.888   –   64.78   None 17.143   –   71.97   None
Mean sample size per strain6.8   mice 5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 13486.8301 13486.8301 31.4506 < 0.0001
strain 38 56189.6801 1478.6758 3.4482 < 0.0001
sex:strain 38 25593.0163 673.5004 1.5706 0.019
Residuals 437 187397.0303 428.8262


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x BXD100)F1-ADtg f 37.693 10.937   6 4.4651 0.2902 27.27, 53.66 0.12
(B6.5XFAD x BXD101)F1 f 23.615 29.635   2   20.955 1.2549 2.66, 44.57 -0.81
(B6.5XFAD x BXD 102)F1 f 15.3 0.0   1   0.0 0.0 15.3, 15.3 -1.36
(B6.5XFAD x BXD113)F1 f 54.57 20.583   9 6.861 0.3772 15.74, 78.27 1.23
(B6.5XFAD x BXD113)F1 m 49.18 9.4384   5 4.221 0.1919 33.48, 58.76 0.02
(B6.5XFAD x BXD124)F1 f 61.06 15.29   18 3.6038 0.2504 34.59, 92.24 1.66
(B6.5XFAD x BXD124)F1 m 62.27 28.368   7 10.722 0.4555 4.88, 88.25 1.0
(B6.5XFAD x BXD125)F1 f 35.55 20.306   9 6.7687 0.5712 0.89, 62.08 -0.02
(B6.5XFAD x BXD125)F1 m 55.73 20.995   6 8.571 0.3767 25.94, 80.93 0.51
(B6.5XFAD x BXD12)F1 f 18.923 21.056   6 8.5959 1.1127 -1.12
(B6.5XFAD x BXD12)F1 m 57.51 24.564   8 8.6846 0.4271 24.83, 88.91 0.64
(B6.5XFAD x BXD14)F1-ADtg f 51.5 15.455   4 7.7275 0.3001 39.91, 74.06 1.03
(B6.5XFAD x BXD14)F1-ADtg m 53.41 23.69   11 7.1427 0.4435 11.75, 92.9 0.34
(B6.5XFAD x BXD152)F1 f 23.326 36.479   5 16.314 1.5639 1.55, 88.03 -0.83
(B6.5XFAD x BXD152)F1 m 71.97 23.111   5 10.336 0.3211 38.58, 98.67 1.73
(B6.5XFAD x BXD154)F1 f 51.75 18.799   5 8.4072 0.3633 30.38, 74.28 1.05
(B6.5XFAD x BXD154)F1 m 64.25 17.465   4 8.7326 0.2719 41.46, 83.81 1.15
(B6.5XFAD x BXD161)F1 f 32.627 22.176   7 8.3817 0.6797 4.66, 65.41 -0.22
(B6.5XFAD x BXD161)F1 m 42.658 17.875   5 7.9942 0.419 14.41, 62.97 -0.47
(B6.5XFAD x BXD169)F1 f 64.78 23.556   6 9.6168 0.3636 33.92, 89.36 1.91
(B6.5XFAD x BXD169)F1 m 63.71 20.819   6 8.4995 0.3268 37.69, 100.0 1.11
(B6.5XFAD x BXD16)F1-ADtg f 41.284 6.042   5 2.7021 0.1464 35.03, 50.11 0.35
(B6.5XFAD x BXD16)F1-ADtg m 58.82 19.105   7 7.2212 0.3248 39.69, 85.59 0.74
(B6.5XFAD x BXD19)F1 f 38.838 12.464   6 5.0884 0.3209 21.73, 57.43 0.19
(B6.5XFAD x BXD19)F1 m 53.66 18.373   6 7.5007 0.3424 32.37, 73.17 0.35
(B6.5XFAD x BXD22)F1-ADtg f 51.72 11.715   4 5.8573 0.2265 34.81, 60.53 1.04
(B6.5XFAD x BXD28)F1 f 49.618 19.296   9 6.4319 0.3889 13.3, 72.51 0.91
(B6.5XFAD x BXD28)F1 m 66.63 23.052   2   16.3 0.346 50.33, 82.93 1.33
(B6.5XFAD x BXD31)F1 f 0.888 1.5372   5 0.68745 1.7311 -2.31
(B6.5XFAD x BXD31)F1 m 57.5 16.415   3 9.4773 0.2855 42.35, 74.94 0.64
(B6.5XFAD x BXD32)F1-ADtg f 13.415 17.254   4 8.6269 1.2862 0.89, 37.92 -1.49
(B6.5XFAD x BXD32)F1-ADtg m 40.612 21.313   6 8.7008 0.5248 19.07, 69.62 -0.62
(B6.5XFAD x BXD33)F1 f 58.51 27.521   9 9.1737 0.4704 13.53, 84.48 1.49
(B6.5XFAD x BXD34)F1-ADtg f 38.802 15.24   8 5.3883 0.3928 7.76, 59.87 0.19
(B6.5XFAD x BXD34)F1-ADtg m 63.75 16.034   4 8.0171 0.2515 41.46, 76.5 1.11
(B6.5XFAD x BXD38)F1 f 40.178 27.019   10 8.5443 0.6725 3.33, 83.37 0.28
(B6.5XFAD x BXD38)F1 m 56.26 18.666   5 8.3476 0.3318 29.49, 75.79 0.55
(B6.5XFAD x BXD39)F1 f 49.51 20.83   7 7.873 0.4207 10.2, 68.74 0.9
(B6.5XFAD x BXD39)F1 m 60.88 21.306   7 8.0528 0.35 27.05, 84.48 0.9
(B6.5XFAD x BXD42)F1-ADtg f 22.306 12.517   5 5.5976 0.5611 8.2, 38.36 -0.9
(B6.5XFAD x BXD42)F1-ADtg m 39.245 10.034   2   7.095 0.2557 32.15, 46.34 -0.73
(B6.5XFAD x BXD48a)F1 f 20.697 14.399   3 8.3133 0.6957 9.09, 36.81 -1.01
(B6.5XFAD x BXD48a)F1 m 50.28 12.206   4 6.1028 0.2428 38.58, 62.31 0.1
(B6.5XFAD x BXD49)F1 f 40.133 29.877   3 17.25 0.7444 5.76, 59.87 0.28
(B6.5XFAD x BXD49)F1 m 56.84 47.371   3 27.35 0.8334 2.22, 86.7 0.59
(B6.5XFAD x BXD50)F1 f 38.063 16.432   9 5.4773 0.4317 0.14
(B6.5XFAD x BXD50)F1 m 44.39 32.354   5 14.469 0.7288 8.43, 86.92 -0.34
(B6.5XFAD x BXD51)F1-ADtg f 34.7 24.296   2   17.18 0.7002 17.52, 51.88 -0.08
(B6.5XFAD x BXD53)F1 f 59.87 31.326   3 18.086 0.5232 26.39, 88.47 1.58
(B6.5XFAD x BXD55)F1-ADtg f 11.93 9.9744   5 4.4607 0.8361 4.66, 29.27 -1.59
(B6.5XFAD x BXD55)F1-ADtg m 22.806 12.218   7 4.6181 0.5358 6.65, 37.03 -1.96
(B6.5XFAD x BXD60)F1-ADtg f 35.444 16.992   7 6.4222 0.4794 7.32, 56.98 -0.03
(B6.5XFAD x BXD60)F1-ADtg m 30.407 19.079   7 7.2113 0.6275 3.77, 49.22 -1.39
(B6.5XFAD x BXD61)F1-ADtg f 26.46 20.45   6 8.3487 0.7729 -0.63
(B6.5XFAD x BXD61)F1-ADtg m 54.59 21.778   5 9.7396 0.3989 23.28, 79.38 0.42
(B6.5XFAD x BXD62)F1-ADtg f 41.64 23.016   5 10.293 0.5527 3.99, 61.2 0.38
(B6.5XFAD x BXD62)F1-ADtg m 58.85 20.749   5 9.2791 0.3526 27.05, 81.6 0.74
(B6.5XFAD x BXD64)F1 f 42.963 28.511   4 14.256 0.6636 14.86, 82.71 0.47
(B6.5XFAD x BXD65a)F1 f 38.076 23.744   11 7.1589 0.6236 3.77, 74.72 0.14
(B6.5XFAD x BXD65)F1-ADtg f 40.356 25.012   5 11.186 0.6198 0.29
(B6.5XFAD x BXD65)F1-ADtg m 55.08 11.464   5 5.1266 0.2081 40.35, 69.4 0.46
(B6.5XFAD x BXD66)F1-ADtg f 42.61 21.089   6 8.6096 0.4949 17.07, 67.63 0.44
(B6.5XFAD x BXD66)F1-ADtg m 46.01 12.429   4 6.2146 0.2701 32.82, 62.75 -0.22
(B6.5XFAD x BXD68)F1-ADtg f 27.516 19.353   10 6.1199 0.7033 3.99, 52.99 -0.56
(B6.5XFAD x BXD68)F1-ADtg m 38.448 9.4291   5 4.2168 0.2452 26.61, 49.89 -0.79
(B6.5XFAD x BXD73)F1 f 26.347 17.594   6 7.1826 0.6678 -0.63
(B6.5XFAD x BXD73)F1 m 46.373 21.769   7 8.2277 0.4694 13.08, 66.96 -0.19
(B6.5XFAD x BXD74)F1 f 48.826 28.408   10 8.9834 0.5818 0.89, 84.7 0.85
(B6.5XFAD x BXD74)F1 m 55.52 23.986   5 10.727 0.432 21.06, 80.93 0.49
(B6.5XFAD x BXD75)F1-ADtg f 19.022 25.085   5 11.218 1.3187 -1.12
(B6.5XFAD x BXD75)F1-ADtg m 29.048 5.5917   4 2.7958 0.1925 21.73, 34.59 -1.49
(B6.5XFAD x BXD77)F1-ADtg f 34.95 31.271   8 11.056 0.8947 -0.06
(B6.5XFAD x BXD77)F1-ADtg m 29.046 10.385   5 4.6445 0.3575 16.85, 39.91 -1.49
(B6.5XFAD x BXD78)F1 f 35.7 26.284   4 13.142 0.7362 7.76, 59.65 -0.01
(B6.5XFAD x BXD78)F1 m 17.143 12.75   3 7.3613 0.7437 4.43, 29.93 -2.38
(B6.5XFAD x BXD83)F1 f 39.744 19.809   7 7.4873 0.4984 13.75, 75.78 0.25
(B6.5XFAD x BXD83)F1 m 21.675 23.186   4 11.593 1.0697 1.77, 48.12 -2.04
(B6.5XFAD x BXD87)F1-ADtg f 46.95 19.535   8 6.9065 0.4161 13.97, 69.62 0.73
(B6.5XFAD x BXD87)F1-ADtg m 33.095 16.517   4 8.2586 0.4991 13.75, 48.34 -1.19
(B6.5XFAD x BXD89)F1-ADtg f 2.105 2.9769   2   2.105 1.4142 -2.23
(B6.5XFAD x BXD99)F1-ADtg f 47.83 18.547   14 4.9568 0.3878 14.41, 76.5 0.79
(B6.5XFAD x BXD99)F1-ADtg m 50.82 13.499   5 6.0369 0.2656 30.82, 68.51 0.14
(B6.5XFAD x D2)F1-ADtg f 7.0233 5.9905   3 3.4586 0.8529 0.89, 12.86 -1.91
(B6.5XFAD x D2)F1-ADtg m 56.61 11.119   3 6.4193 0.1964 43.9, 64.52 0.58
(B6 x DBA/2J-Gpnmb+/SjJ)F1 f 35.686 19.141   17 4.6424 0.5364 2.0, 81.37 -0.02
(B6 x DBA/2J-Gpnmb+/SjJ)F1 m 44.219 18.861   19 4.327 0.4265 18.63, 86.47 -0.35
C57BL/6J f 39.574 28.295   18 6.6693 0.715 0.24
C57BL/6J m 49.037 20.678   20 4.6238 0.4217 11.09, 96.23 0.01


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 13.415 10.3540590628 33.7649436122 -6.9349436122
129S1/SvImJ 2 40.6116666667 8.4540538235 57.2273260481 23.9960072852
A/J 1 38.8025 7.3214253761 53.192083125 24.412916875
A/J 2 63.7475 10.3540590628 84.0974436122 43.3975563878
AKR/J 1 46.95 7.3214253761 61.339583125 32.560416875
AKR/J 2 33.095 10.3540590628 53.4449436122 12.7450563878
ALR/LtJ 1 61.0611111111 4.8809502507 70.6541665278 51.4680556945
ALR/LtJ 2 62.2742857143 7.8269329544 77.6573971406 46.891174288
ALS/LtJ 1 35.55 6.9027060419 49.1166290748 21.9833709252
ALS/LtJ 2 55.7266666667 8.4540538235 72.3423260481 39.1110072852
BALB/cJ 1 22.306 9.260951963 40.5075429021 4.1044570979
BALB/cJ 2 39.245 14.6428507522 68.0241662499 10.4658337501
BPH/2J 1 38.0633333333 6.9027060419 51.6299624081 24.4967042585
BPH/2J 2 44.39 9.260951963 62.5915429021 26.1884570979
BPL/1J 1 18.9233333333 8.4540538235 35.5389927148 2.3076739519
BPL/1J 2 57.51 7.3214253761 71.899583125 43.120416875
BPN/3J 1 64.7816666667 8.4540538235 81.3973260481 48.1660072852
BPN/3J 2 63.71 8.4540538235 80.3256593814 47.0943406186
BTBR T+ Itpr3tf/J 1 51.4975 10.3540590628 71.8474436122 31.1475563878
BTBR T+ Itpr3tf/J 2 53.4145454545 6.2437325397 65.6860231757 41.1430677333
BUB/BnJ 1 23.326 9.260951963 41.5275429021 5.1244570979
BUB/BnJ 2 71.974 9.260951963 90.1755429021 53.7724570979
C3H/HeJ 1 11.93 9.260951963 30.1315429021 -6.2715429021
C3H/HeJ 2 22.8057142857 7.8269329544 38.188825712 7.4226028594
C57BL/10J 1 39.7442857143 7.8269329544 55.1273971406 24.361174288
C57BL/10J 2 21.675 10.3540590628 42.0249436122 1.3250563878
C57BL/6J 1 35.4442857143 7.8269329544 50.8273971406 20.061174288
C57BL/6J 2 30.4071428571 7.8269329544 45.7902542835 15.0240314308
C57BLKS/J 1 26.3466666667 8.4540538235 42.9623260481 9.7310072852
C57BLKS/J 2 46.3728571429 7.8269329544 61.7559685692 30.9897457165
C57BR/cdJ 1 49.51 7.8269329544 64.8931114263 34.1268885737
C57BR/cdJ 2 60.88 7.8269329544 76.2631114263 45.4968885737
C57L/J 1 35.7 10.3540590628 56.0499436122 15.3500563878
C57L/J 2 17.1433333333 11.9558375742 40.6414241784 -6.3547575117
C58/J 1 38.8383333333 8.4540538235 55.4539927148 22.2226739519
C58/J 2 53.6566666667 8.4540538235 70.2723260481 37.0410072852
CAST/EiJ 1 41.284 9.260951963 59.4855429021 23.0824570979
CAST/EiJ 2 58.8214285714 7.8269329544 74.2045399977 43.4383171451
CBA/J 1 47.83 5.5344773679 58.7075024053 36.9524975947
CBA/J 2 50.818 9.260951963 69.0195429021 32.6164570979
CE/J 1 51.752 9.260951963 69.9535429021 33.5504570979
CE/J 2 64.245 10.3540590628 84.5949436122 43.8950563878
DBA/2J 1 26.46 8.4540538235 43.0756593814 9.8443406186
DBA/2J 2 54.59 9.260951963 72.7915429021 36.3884570979
FVB/NJ 1 41.64 9.260951963 59.8415429021 23.4384570979
FVB/NJ 2 58.848 9.260951963 77.0495429021 40.6464570979
I/LnJ 1 0.888 9.260951963 19.0895429021 -17.3135429021
I/LnJ 2 57.5 11.9558375742 80.998090845 34.001909155
KK/HlJ 1 54.5688888889 6.9027060419 68.1355179637 41.0022598141
KK/HlJ 2 49.18 9.260951963 67.3815429021 30.9784570979
LP/J 1 40.356 9.260951963 58.5575429021 22.1544570979
LP/J 2 55.078 9.260951963 73.2795429021 36.8764570979
MA/MyJ 1 35.6858823529 5.0224563729 45.5570549398 25.8147097661
MA/MyJ 2 44.2189473684 4.7507681169 53.5561418645 34.8817528724
NOD/ShiLtJ 1 19.022 9.260951963 37.2235429021 0.8204570979
NOD/ShiLtJ 2 29.0475 10.3540590628 49.3974436122 8.6975563878
NON/ShiLtJ 1 40.1333333333 11.9558375742 63.6314241784 16.6352424883
NON/ShiLtJ 2 56.84 11.9558375742 80.338090845 33.341909155
NZB/BlNJ 1 42.61 8.4540538235 59.2256593814 25.9943406186
NZB/BlNJ 2 46.01 10.3540590628 66.3599436122 25.6600563878
NZW/LacJ 1 48.826 6.5484819333 61.6964344141 35.9555655859
NZW/LacJ 2 55.52 9.260951963 73.7215429021 37.3184570979
PL/J 1 34.95 7.3214253761 49.339583125 20.560416875
PL/J 2 29.046 9.260951963 47.2475429021 10.8444570979
RBF/DnJ 1 20.6966666667 11.9558375742 44.1947575117 -2.8014241784
RBF/DnJ 2 50.2775 10.3540590628 70.6274436122 29.9275563878
RIIIS/J 1 32.6271428571 7.8269329544 48.0102542835 17.2440314308
RIIIS/J 2 42.658 9.260951963 60.8595429021 24.4564570979
SEA/GnJ 1 49.6177777778 6.9027060419 63.1844068526 36.051148703
SEA/GnJ 2 66.63 14.6428507522 95.4091662499 37.8508337501
SJL/J 1 7.0233333333 11.9558375742 30.5214241784 -16.4747575117
SJL/J 2 56.6133333333 11.9558375742 80.1114241784 33.1152424883
SM/J 1 40.178 6.5484819333 53.0484344141 27.3075655859
SM/J 2 56.264 9.260951963 74.4655429021 38.0624570979
SPRET/EiJ 1 39.5738888889 4.8809502507 49.1669443055 29.9808334722
SPRET/EiJ 2 49.0365 4.6304759815 58.137271451 39.935728549
SWR/J 1 27.516 6.5484819333 40.3864344141 14.6455655859
SWR/J 2 38.448 9.260951963 56.6495429021 20.2464570979


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 27.0133333333 6.683516386 40.1491654511 13.8775012156
A/J both 51.275 6.3405403676 63.7367445361 38.8132554639
AKR/J both 40.0225 6.3405403676 52.4842445361 27.5607554639
ALR/LtJ both 61.6676984127 4.6120644733 70.7322837504 52.6031130749
ALS/LtJ both 45.6383333333 5.4570682777 56.3636953451 34.9129713216
BALB/cJ both 30.7755 8.6628273302 47.8014843626 13.7495156374
BPH/2J both 41.2266666667 5.7752182202 52.5773229084 29.876010425
BPL/1J both 38.2166666667 5.5918309968 49.2068923148 27.2264410185
BPN/3J both 64.2458333333 5.9779187871 75.9948787558 52.4967879108
BTBR T+ Itpr3tf/J both 52.4560227273 6.0454680361 64.3378299392 40.5742155154
BUB/BnJ both 47.65 6.5484819333 60.5204344141 34.7795655859
C3H/HeJ both 17.3678571429 6.0627161968 29.2835640163 5.4521502695
C57BL/10J both 30.7096428571 6.4897499672 43.4646450345 17.9546406798
C57BL/6J both 32.9257142857 5.5344773679 43.803216691 22.0482118804
C57BLKS/J both 36.3597619048 5.7604666808 47.6814253629 25.0380984467
C57BR/cdJ both 55.195 5.5344773679 66.0725024053 44.3174975947
C57L/J both 26.4216666667 7.9080432342 41.9641928318 10.8791405015
C58/J both 46.2475 5.9779187871 57.9965454225 34.4984545775
CAST/EiJ both 50.0527142857 6.0627161968 61.9684211591 38.1370074123
CBA/J both 49.324 5.3943412711 59.926077893 38.721922107
CE/J both 57.9985 6.9457139722 71.6496571766 44.3473428234
DBA/2J both 40.525 6.2696941176 52.8475027967 28.2024972033
FVB/NJ both 50.244 6.5484819333 63.1144344141 37.3735655859
I/LnJ both 29.194 7.5615356139 44.0554975472 14.3325024528
KK/HlJ both 51.8744444444 5.7752182202 63.2251006862 40.5237882027
LP/J both 47.717 6.5484819333 60.5874344141 34.8465655859
MA/MyJ both 39.9524148607 3.4566915439 46.7462217702 33.1586079511
NOD/ShiLtJ both 24.03475 6.9457139722 37.6859071766 10.3835928234
NON/ShiLtJ both 48.4866666667 8.4540538235 65.1023260481 31.8710072852
NZB/BlNJ both 44.31 6.683516386 57.4458321177 31.1741678823
NZW/LacJ both 52.173 5.6711517104 63.3191231604 41.0268768396
PL/J both 31.998 5.9027218467 43.5992528044 20.3967471956
RBF/DnJ both 35.4870833333 7.9080432342 51.0296094985 19.9445571682
RIIIS/J both 37.6425714286 6.0627161968 49.558278302 25.7268645552
SEA/GnJ both 58.1238888889 8.0941403011 74.0321715939 42.2156061838
SJL/J both 31.8183333333 8.4540538235 48.4339927148 15.2026739519
SM/J both 48.221 5.6711517104 59.3671231604 37.0748768396
SPRET/EiJ both 44.3051944444 3.3639628106 50.9167516217 37.6936372672
SWR/J both 32.982 5.6711517104 44.1281231604 21.8358768396




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA