Project measure / variable:   Project1202   CFC.PS3_3_Ntg_HFD

ID, description, units MPD:130448   CFC.PS3_3_Ntg_HFD   CFC.PS3    3 Ntg HFD  
Data set, strains Project1202   F1 AD-BXD   32 strains     sex: both
Procedure None
Ontology mappings


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  STRAIN COMPARISON PLOT
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Project1202 - CFC.PS3 3 Ntg HFD



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested32 strains32 strains
Mean of the strain means49.755   None 49.155   None
Median of the strain means48.0   None 48.467   None
SD of the strain means± 12.455 ± 15.74
Coefficient of variation (CV)0.2503 0.3202
Min–max range of strain means26.0   –   73.78   None 13.333   –   80.66   None
Mean sample size per strain6.1   mice 5.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 231.5144 231.5144 0.5716 0.4502
strain 31 48384.6162 1560.7941 3.8535 < 0.0001
sex:strain 31 23790.2159 767.4263 1.8947 0.0036
Residuals 319 129205.6924 405.0335


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x BXD113)F1 f 50.48 22.103   7 8.3542 0.4379 2.67, 70.67 0.06
(B6.5XFAD x BXD113)F1 m 54.66 47.143   2   33.335 0.8624 21.33, 88.0 0.35
(B6.5XFAD x BXD124)F1 f 57.0 21.16   6 8.6387 0.3712 27.33, 81.33 0.58
(B6.5XFAD x BXD124)F1 m 56.53 20.941   5 9.3653 0.3704 32.0, 73.33 0.47
(B6.5XFAD x BXD125)F1 f 36.666 30.61   5 13.689 0.8348 6.67, 83.33 -1.05
(B6.5XFAD x BXD125)F1 m 68.44 7.4202   6 3.0293 0.1084 57.33, 77.33 1.23
(B6.5XFAD x BXD12)F1 f 60.33 18.536   6 7.5674 0.3072 37.33, 81.33 0.85
(B6.5XFAD x BXD12)F1 m 27.445 22.018   6 8.9887 0.8023 -1.38
(B6.5XFAD x BXD14)F1-ADtg f 69.17 15.059   4 7.5295 0.2177 50.0, 86.0 1.56
(B6.5XFAD x BXD14)F1-ADtg m 57.33 26.787   6 10.936 0.4672 23.33, 90.0 0.52
(B6.5XFAD x BXD152)F1 f 61.73 20.071   5 8.9761 0.3251 27.33, 76.0 0.96
(B6.5XFAD x BXD152)F1 m 72.0 9.7252   6 3.9703 0.1351 58.0, 82.0 1.45
(B6.5XFAD x BXD154)F1 f 38.953 22.208   7 8.394 0.5701 6.0, 72.0 -0.87
(B6.5XFAD x BXD154)F1 m 36.4 26.867   5 12.015 0.7381 -0.81
(B6.5XFAD x BXD161)F1 f 32.582 27.212   8 9.621 0.8352 2.0, 86.0 -1.38
(B6.5XFAD x BXD161)F1 m 40.763 17.246   7 6.5183 0.4231 22.0, 62.67 -0.53
(B6.5XFAD x BXD169)F1 f 72.76 14.78   7 5.5862 0.2031 51.33, 95.33 1.85
(B6.5XFAD x BXD169)F1 m 62.47 14.306   10 4.5239 0.229 42.0, 79.33 0.85
(B6.5XFAD x BXD16)F1-ADtg f 52.8 11.9   5 5.3218 0.2254 34.67, 68.0 0.24
(B6.5XFAD x BXD16)F1-ADtg m 80.66 16.03   2   11.335 0.1987 69.33, 92.0 2.0
(B6.5XFAD x BXD19)F1 f 45.222 22.416   6 9.1515 0.4957 16.0, 74.67 -0.36
(B6.5XFAD x BXD19)F1 m 46.333 31.388   6 12.814 0.6774 7.33, 90.67 -0.18
(B6.5XFAD x BXD28)F1 f 43.202 19.268   10 6.0932 0.446 12.67, 68.67 -0.53
(B6.5XFAD x BXD28)F1 m 55.14 19.354   7 7.3153 0.351 34.67, 82.67 0.38
(B6.5XFAD x BXD38)F1 f 45.333 9.2933   7 3.5125 0.205 30.67, 56.0 -0.36
(B6.5XFAD x BXD38)F1 m 54.78 14.195   6 5.7951 0.2591 40.67, 78.67 0.36
(B6.5XFAD x BXD39)F1 f 67.6 3.5775   5 1.5999 0.0529 62.67, 72.67 1.43
(B6.5XFAD x BXD39)F1 m 66.53 15.043   5 6.7274 0.2261 42.67, 80.0 1.1
(B6.5XFAD x BXD50)F1 f 59.07 12.504   5 5.592 0.2117 46.67, 76.67 0.75
(B6.5XFAD x BXD50)F1 m 56.27 10.881   5 4.8662 0.1934 40.0, 66.67 0.45
(B6.5XFAD x BXD55)F1-ADtg f 31.619 10.926   7 4.1296 0.3456 16.0, 49.33 -1.46
(B6.5XFAD x BXD55)F1-ADtg m 13.333 12.989   6 5.3029 0.9742 -2.28
(B6.5XFAD x BXD60)F1-ADtg f 42.0 19.713   6 8.0478 0.4694 18.0, 64.0 -0.62
(B6.5XFAD x BXD60)F1-ADtg m 49.334 30.874   5 13.807 0.6258 12.0, 82.0 0.01
(B6.5XFAD x BXD61)F1-ADtg f 63.5 13.504   4 6.7521 0.2127 45.33, 78.0 1.1
(B6.5XFAD x BXD61)F1-ADtg m 26.297 21.328   9 7.1093 0.811 -1.45
(B6.5XFAD x BXD62)F1-ADtg f 73.78 15.899   6 6.4905 0.2155 54.0, 96.67 1.93
(B6.5XFAD x BXD62)F1-ADtg m 54.67 25.045   5 11.2 0.4581 26.67, 84.0 0.35
(B6.5XFAD x BXD65)F1-ADtg f 51.87 18.284   5 8.177 0.3525 33.33, 80.0 0.17
(B6.5XFAD x BXD65)F1-ADtg m 44.835 12.248   4 6.1242 0.2732 34.0, 62.0 -0.27
(B6.5XFAD x BXD66)F1-ADtg f 39.6 18.542   10 5.8633 0.4682 14.0, 77.33 -0.82
(B6.5XFAD x BXD66)F1-ADtg m 45.333 15.923   6 6.5004 0.3512 26.0, 72.0 -0.24
(B6.5XFAD x BXD68)F1-ADtg f 42.381 16.804   7 6.3512 0.3965 20.67, 66.67 -0.59
(B6.5XFAD x BXD68)F1-ADtg m 41.249 14.425   8 5.0999 0.3497 23.33, 63.33 -0.5
(B6.5XFAD x BXD73)F1 f 35.049 21.479   7 8.1182 0.6128 4.0, 58.0 -1.18
(B6.5XFAD x BXD73)F1 m 42.134 23.153   5 10.355 0.5495 22.0, 80.0 -0.45
(B6.5XFAD x BXD74)F1 f 64.91 15.812   8 5.5905 0.2436 45.33, 84.67 1.22
(B6.5XFAD x BXD74)F1 m 36.112 23.995   6 9.796 0.6645 -0.83
(B6.5XFAD x BXD75)F1-ADtg f 26.0 24.205   6 9.8817 0.931 -1.91
(B6.5XFAD x BXD75)F1-ADtg m 25.62 21.951   7 8.2966 0.8568 2.67, 56.0 -1.5
(B6.5XFAD x BXD77)F1-ADtg f 47.868 17.356   5 7.762 0.3626 22.0, 62.67 -0.15
(B6.5XFAD x BXD77)F1-ADtg m 23.049 18.733   7 7.0806 0.8128 2.67, 56.0 -1.66
(B6.5XFAD x BXD83)F1 f 48.132 16.229   5 7.2578 0.3372 32.67, 73.33 -0.13
(B6.5XFAD x BXD83)F1 m 43.333 21.901   9 7.3003 0.5054 9.33, 74.0 -0.37
(B6.5XFAD x BXD87)F1-ADtg f 39.557 19.815   6 8.0895 0.5009 10.0, 66.0 -0.82
(B6.5XFAD x BXD87)F1-ADtg m 62.38 27.803   7 10.509 0.4457 8.67, 90.67 0.84
(B6.5XFAD x BXD99)F1-ADtg f 50.22 21.199   6 8.6543 0.4221 18.0, 78.67 0.04
(B6.5XFAD x BXD99)F1-ADtg m 69.83 6.8073   4 3.4036 0.0975 66.0, 80.0 1.31
(B6.5XFAD x D2)F1-ADtg f 42.0 41.945   4 20.973 0.9987 2.67, 84.0 -0.62
(B6.5XFAD x D2)F1-ADtg m 66.34 0.47376   2   0.335 0.0071 66.0, 66.67 1.09
(B6 x DBA/2J-Gpnmb+/SjJ)F1 f 53.16 19.064   4 9.5318 0.3586 25.33, 68.0 0.27
(B6 x DBA/2J-Gpnmb+/SjJ)F1 m 47.6 24.488   5 10.951 0.5145 10.0, 69.33 -0.1
C57BL/6J f 47.62 12.262   7 4.6346 0.2575 32.67, 66.67 -0.17
C57BL/6J m 45.751 27.641   8 9.7726 0.6042 2.67, 88.67 -0.22


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 31.6185714286 7.6067030458 46.5842149317 16.6529279254
129S1/SvImJ 2 13.3333333333 8.216178335 29.4980758214 -2.8314091548
A/J 1 42.0 8.216178335 58.1647424881 25.8352575119
A/J 2 49.334 9.0003724211 67.041588194 31.626411806
AKR/J 1 50.4785714286 7.6067030458 65.4442149317 35.5129279254
AKR/J 2 54.665 14.2308383202 82.6631552807 26.6668447193
ALR/LtJ 1 61.732 9.0003724211 79.439588194 44.024411806
ALR/LtJ 2 72.0 8.216178335 88.1647424881 55.8352575119
ALS/LtJ 1 38.9528571429 7.6067030458 53.918500646 23.9872136397
ALS/LtJ 2 36.4 9.0003724211 54.107588194 18.692411806
BALB/cJ 1 63.4975 10.0627222782 83.2951854597 43.6998145403
BALB/cJ 2 26.2966666667 6.7084815188 39.4951236398 13.0982096936
BPH/2J 1 32.5825 7.1154191601 46.5815776403 18.5834223597
BPH/2J 2 40.7628571429 7.6067030458 55.728500646 25.7972136397
BPL/1J 1 36.666 9.0003724211 54.373588194 18.958411806
BPL/1J 2 68.4433333333 8.216178335 84.6080758214 52.2785908452
BPN/3J 1 45.3328571429 7.6067030458 60.298500646 30.3672136397
BPN/3J 2 54.78 8.216178335 70.9447424881 38.6152575119
BTBR T+ Itpr3tf/J 1 69.1675 10.0627222782 88.9651854597 49.3698145403
BTBR T+ Itpr3tf/J 2 57.3333333333 8.216178335 73.4980758214 41.1685908452
BUB/BnJ 1 72.76 7.6067030458 87.7256435031 57.7943564969
BUB/BnJ 2 62.467 6.3642243722 74.9881556904 49.9458443096
C3H/HeJ 1 73.7783333333 8.216178335 89.9430758214 57.6135908452
C3H/HeJ 2 54.668 9.0003724211 72.375588194 36.960411806
C57BL/6J 1 51.866 9.0003724211 69.573588194 34.158411806
C57BL/6J 2 44.835 10.0627222782 64.6326854597 25.0373145403
C57BR/cdJ 1 47.62 7.6067030458 62.5856435031 32.6543564969
C57BR/cdJ 2 45.75125 7.1154191601 59.7503276403 31.7521723597
C58/J 1 67.602 9.0003724211 85.309588194 49.894411806
C58/J 2 66.534 9.0003724211 84.241588194 48.826411806
CAST/EiJ 1 52.8 9.0003724211 70.507588194 35.092411806
CAST/EiJ 2 80.665 14.2308383202 108.6631552807 52.6668447193
CBA/J 1 60.3333333333 8.216178335 76.4980758214 44.1685908452
CBA/J 2 27.445 8.216178335 43.6097424881 11.2802575119
CE/J 1 45.2216666667 8.216178335 61.3864091548 29.0569241786
CE/J 2 46.3333333333 8.216178335 62.4980758214 30.1685908452
DBA/2J 1 39.6 6.3642243722 52.1211556904 27.0788443096
DBA/2J 2 45.3333333333 8.216178335 61.4980758214 29.1685908452
FVB/NJ 1 42.3814285714 7.6067030458 57.3470720746 27.4157850683
FVB/NJ 2 41.24875 7.1154191601 55.2478276403 27.2496723597
I/LnJ 1 64.915 7.1154191601 78.9140776403 50.9159223597
I/LnJ 2 36.1116666667 8.216178335 52.2764091548 19.9469241786
KK/HlJ 1 56.9983333333 8.216178335 73.1630758214 40.8335908452
KK/HlJ 2 56.532 9.0003724211 74.239588194 38.824411806
LP/J 1 26.0 8.216178335 42.1647424881 9.8352575119
LP/J 2 25.62 7.6067030458 40.5856435031 10.6543564969
MA/MyJ 1 59.068 9.0003724211 76.775588194 41.360411806
MA/MyJ 2 56.268 9.0003724211 73.975588194 38.560411806
NOD/ShiLtJ 1 50.2233333333 8.216178335 66.3880758214 34.0585908452
NOD/ShiLtJ 2 69.8325 10.0627222782 89.6301854597 50.0348145403
NZB/BlNJ 1 47.868 9.0003724211 65.575588194 30.160411806
NZB/BlNJ 2 23.0485714286 7.6067030458 38.0142149317 8.0829279254
PL/J 1 42.0 10.0627222782 61.7976854597 22.2023145403
PL/J 2 66.335 14.2308383202 94.3331552807 38.3368447193
RIIIS/J 1 43.202 6.3642243722 55.7231556904 30.6808443096
RIIIS/J 2 55.1442857143 7.6067030458 70.1099292174 40.1786422112
SEA/GnJ 1 35.0485714286 7.6067030458 50.0142149317 20.0829279254
SEA/GnJ 2 42.134 9.0003724211 59.841588194 24.426411806
SJL/J 1 53.165 10.0627222782 72.9626854597 33.3673145403
SJL/J 2 47.6 9.0003724211 65.307588194 29.892411806
SM/J 1 48.132 9.0003724211 65.839588194 30.424411806
SM/J 2 43.3333333333 6.7084815188 56.5317903064 30.1348763602
SWR/J 1 39.5566666667 8.216178335 55.7214091548 23.3919241786
SWR/J 2 62.3828571429 7.6067030458 77.348500646 47.4172136397


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 22.475952381 5.5983818568 33.4903677668 11.4615369951
A/J both 45.667 6.0932809338 57.6550938785 33.6789061215
AKR/J both 52.5717857143 8.0681269593 68.4452477231 36.6983237055
ALR/LtJ both 66.866 6.0932809338 78.8540938785 54.8779061215
ALS/LtJ both 37.6764285714 5.8921268432 49.268766182 26.0840909608
BALB/cJ both 44.8970833333 6.0469435241 56.7940116767 33.0001549899
BPH/2J both 36.6726785714 5.2079535581 46.9189542392 26.4264029036
BPL/1J both 52.5546666667 6.0932809338 64.5427605451 40.5665727882
BPN/3J both 50.0564285714 5.5983818568 61.0708439573 39.0420131856
BTBR T+ Itpr3tf/J both 63.2504166667 6.4954593002 76.0297676798 50.4710656535
BUB/BnJ both 67.6135 4.9589636792 77.3699059121 57.8570940879
C3H/HeJ both 64.2231666667 6.0932809338 76.2112605451 52.2350727882
C57BL/6J both 48.3505 6.7502793158 61.6311911455 35.0698088545
C57BR/cdJ both 46.685625 5.2079535581 56.9319006678 36.4393493322
C58/J both 67.068 6.3642243722 79.5891556904 54.5468443096
CAST/EiJ both 66.7325 8.4190774883 83.296432042 50.168567958
CBA/J both 43.8891666667 5.8097154161 55.3193656961 32.4589676372
CE/J both 45.7775 5.8097154161 57.2076990295 34.3473009705
DBA/2J both 42.4666666667 5.1963674401 52.6901474772 32.2431858562
FVB/NJ both 41.8150892857 5.2079535581 52.0613649535 31.5688136179
I/LnJ both 50.5133333333 5.4344911504 61.2053054911 39.8213611756
KK/HlJ both 56.7651666667 6.0932809338 68.7532605451 44.7770727882
LP/J both 25.81 5.5983818568 36.8244153859 14.7955846141
MA/MyJ both 57.668 6.3642243722 70.1891556904 45.1468443096
NOD/ShiLtJ both 60.0279166667 6.4954593002 72.8072676798 47.2485656535
NZB/BlNJ both 35.4582857143 5.8921268432 47.0506233249 23.8659481037
PL/J both 54.1675 8.7145731242 71.3127985442 37.0222014558
RIIIS/J both 49.1731428571 4.9589636792 58.9295487692 39.416736945
SEA/GnJ both 38.5912857143 5.8921268432 50.1836233249 26.9989481037
SJL/J both 50.3825 6.7502793158 63.6631911455 37.1018088545
SM/J both 45.7326666667 5.6127183255 56.775288028 34.6900453053
SWR/J both 50.9697619048 5.5983818568 61.9841772906 39.9553465189




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA