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Project measure / variable:   Project1202   CFC.PS3_14_5XFAD_HFD

ID, description, units MPD:130447   CFC.PS3_14_5XFAD_HFD   CFC.PS3    14 5XFAD HFD  
Data set, strains Project1202   F1 AD-BXD   41 strains     sex: both
Procedure None
Ontology mappings


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  STRAIN COMPARISON PLOT
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Project1202 - CFC.PS3 14 5XFAD HFD



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested41 strains38 strains
Mean of the strain means33.91   None 47.929   None
Median of the strain means34.8   None 47.35   None
SD of the strain means± 13.811 ± 11.629
Coefficient of variation (CV)0.4073 0.2426
Min–max range of strain means0.0   –   55.44   None 23.168   –   71.73   None
Mean sample size per strain5.4   mice 5.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 12781.0933 12781.0933 35.9936 < 0.0001
strain 34 32881.8255 967.1125 2.7235 < 0.0001
sex:strain 34 16977.2241 499.3301 1.4062 0.0708
Residuals 339 120376.8316 355.0939


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x BXD100)F1-ADtg f 27.6 16.309   5 7.2935 0.5909 7.33, 52.67 -0.46
(B6.5XFAD x BXD113)F1 f 47.555 16.108   6 6.5762 0.3387 34.0, 76.0 0.99
(B6.5XFAD x BXD113)F1 m 44.888 18.218   6 7.4376 0.4059 13.33, 62.0 -0.26
(B6.5XFAD x BXD124)F1 f 55.44 16.877   6 6.89 0.3044 34.0, 75.33 1.56
(B6.5XFAD x BXD124)F1 m 52.14 8.6833   2   6.14 0.1665 46.0, 58.28 0.36
(B6.5XFAD x BXD125)F1 f 44.582 20.269   8 7.1662 0.4546 20.67, 80.0 0.77
(B6.5XFAD x BXD125)F1 m 49.237 11.896   7 4.4961 0.2416 26.67, 61.33 0.11
(B6.5XFAD x BXD12)F1 f 11.704 9.9913   5 4.4683 0.8537 -1.61
(B6.5XFAD x BXD12)F1 m 32.571 20.909   7 7.903 0.642 17.33, 67.33 -1.32
(B6.5XFAD x BXD14)F1-ADtg f 34.8 22.228   5 9.9407 0.6387 4.0, 64.0 0.06
(B6.5XFAD x BXD14)F1-ADtg m 49.141 25.798   9 8.5992 0.525 6.0, 88.67 0.1
(B6.5XFAD x BXD152)F1 f 36.74 21.055   9 7.0182 0.5731 0.2
(B6.5XFAD x BXD152)F1 m 62.0 23.759   5 10.625 0.3832 38.0, 96.67 1.21
(B6.5XFAD x BXD154)F1 f 38.166 26.746   8 9.456 0.7008 2.67, 80.67 0.31
(B6.5XFAD x BXD154)F1 m 45.667 15.231   10 4.8163 0.3335 25.33, 68.67 -0.19
(B6.5XFAD x BXD161)F1 f 32.667 16.742   6 6.8347 0.5125 8.67, 50.0 -0.09
(B6.5XFAD x BXD161)F1 m 60.5 7.3325   4 3.6663 0.1212 52.0, 68.67 1.08
(B6.5XFAD x BXD169)F1 f 32.443 19.395   6 7.9178 0.5978 4.0, 62.0 -0.11
(B6.5XFAD x BXD169)F1 m 71.73 6.3352   5 2.8332 0.0883 63.33, 79.33 2.05
(B6.5XFAD x BXD16)F1-ADtg f 51.77 9.8851   6 4.0356 0.1909 35.33, 65.33 1.29
(B6.5XFAD x BXD16)F1-ADtg m 47.5 17.255   4 8.6273 0.3633 27.33, 64.67 -0.04
(B6.5XFAD x BXD19)F1 f 36.112 13.751   6 5.6139 0.3808 18.0, 52.0 0.16
(B6.5XFAD x BXD19)F1 m 38.936 20.906   5 9.3495 0.5369 14.0, 66.67 -0.77
(B6.5XFAD x BXD28)F1 f 23.25 15.476   8 5.4717 0.6656 2.67, 45.33 -0.77
(B6.5XFAD x BXD28)F1 m 23.168 18.076   4 9.0379 0.7802 5.33, 40.67 -2.13
(B6.5XFAD x BXD31)F1 f 0.0 0.0   1   0.0 None -2.46
(B6.5XFAD x BXD31)F1 m 48.798 23.564   5 10.538 0.4829 25.33, 84.0 0.07
(B6.5XFAD x BXD32)F1-ADtg f 24.832 10.52   4 5.26 0.4236 9.33, 32.0 -0.66
(B6.5XFAD x BXD32)F1-ADtg m 45.598 22.951   5 10.264 0.5033 14.0, 77.33 -0.2
(B6.5XFAD x BXD34)F1-ADtg f 22.918 18.587   5 8.3125 0.811 -0.8
(B6.5XFAD x BXD34)F1-ADtg m 57.46 19.142   5 8.5606 0.3332 33.33, 84.67 0.82
(B6.5XFAD x BXD38)F1 f 50.27 8.1731   5 3.6551 0.1626 40.67, 58.67 1.18
(B6.5XFAD x BXD38)F1 m 52.19 22.951   7 8.6747 0.4397 25.33, 82.67 0.37
(B6.5XFAD x BXD39)F1 f 39.466 11.18   5 4.9998 0.2833 25.33, 56.0 0.4
(B6.5XFAD x BXD39)F1 m 56.93 13.774   5 6.1598 0.2419 35.33, 69.33 0.77
(B6.5XFAD x BXD42)F1-ADtg f 16.443 8.5994   3 4.9649 0.523 9.33, 26.0 -1.26
(B6.5XFAD x BXD42)F1-ADtg m 29.645 32.988   4 16.494 1.1128 2.67, 70.86 -1.57
(B6.5XFAD x BXD48a)F1 f 28.665 24.515   2   17.335 0.8552 11.33, 46.0 -0.38
(B6.5XFAD x BXD48a)F1 m 53.33 20.553   5 9.1917 0.3854 22.67, 74.0 0.46
(B6.5XFAD x BXD49)F1 f 4.0 0.0   1   0.0 0.0 4.0, 4.0 -2.17
(B6.5XFAD x BXD49)F1 m 47.2 11.108   5 4.9678 0.2353 32.0, 63.33 -0.06
(B6.5XFAD x BXD50)F1 f 35.05 20.034   6 8.179 0.5716 12.67, 69.63 0.08
(B6.5XFAD x BXD50)F1 m 44.474 25.514   7 9.6433 0.5737 8.67, 71.33 -0.3
(B6.5XFAD x BXD55)F1-ADtg f 28.223 22.315   6 9.1102 0.7907 -0.41
(B6.5XFAD x BXD55)F1-ADtg m 25.332 19.54   6 7.9772 0.7714 -1.94
(B6.5XFAD x BXD60)F1-ADtg f 53.0 15.375   6 6.2769 0.2901 32.67, 72.67 1.38
(B6.5XFAD x BXD60)F1-ADtg m 38.763 17.098   7 6.4625 0.4411 18.67, 66.0 -0.79
(B6.5XFAD x BXD61)F1-ADtg f 27.222 26.625   6 10.87 0.9781 -0.48
(B6.5XFAD x BXD61)F1-ADtg m 56.1 23.897   7 9.032 0.426 17.33, 80.0 0.7
(B6.5XFAD x BXD62)F1-ADtg f 25.066 23.901   5 10.689 0.9535 -0.64
(B6.5XFAD x BXD62)F1-ADtg m 62.89 21.556   3 12.445 0.3428 43.33, 86.0 1.29
(B6.5XFAD x BXD65)F1-ADtg f 16.953 16.913   7 6.3925 0.9977 -1.23
(B6.5XFAD x BXD65)F1-ADtg m 43.038 22.306   9 7.4355 0.5183 15.33, 73.33 -0.42
(B6.5XFAD x BXD66)F1-ADtg f 41.427 15.409   7 5.8239 0.3719 21.33, 64.0 0.54
(B6.5XFAD x BXD66)F1-ADtg m 45.0 6.919   4 3.4595 0.1538 40.0, 54.67 -0.25
(B6.5XFAD x BXD68)F1-ADtg f 30.665 20.607   8 7.2856 0.672 -0.23
(B6.5XFAD x BXD68)F1-ADtg m 45.031 19.889   11 5.9968 0.4417 6.67, 74.0 -0.25
(B6.5XFAD x BXD73)F1 f 31.222 10.595   6 4.3255 0.3394 13.33, 42.0 -0.19
(B6.5XFAD x BXD73)F1 m 42.859 12.411   7 4.6911 0.2896 32.0, 64.67 -0.44
(B6.5XFAD x BXD74)F1 f 43.2 13.495   5 6.0353 0.3124 29.33, 62.0 0.67
(B6.5XFAD x BXD74)F1 m 57.11 23.448   6 9.5726 0.4106 16.0, 81.33 0.79
(B6.5XFAD x BXD75)F1-ADtg f 10.888 13.244   6 5.4069 1.2164 -1.67
(B6.5XFAD x BXD75)F1-ADtg m 40.8 11.464   5 5.1269 0.281 32.0, 60.0 -0.61
(B6.5XFAD x BXD77)F1-ADtg f 37.888 15.912   6 6.4961 0.42 23.33, 65.33 0.29
(B6.5XFAD x BXD77)F1-ADtg m 32.445 19.688   6 8.0374 0.6068 8.67, 55.33 -1.33
(B6.5XFAD x BXD78)F1 f 54.67 17.088   3 9.8658 0.3126 36.67, 70.67 1.5
(B6.5XFAD x BXD83)F1 f 45.0 24.387   6 9.9561 0.5419 6.67, 74.67 0.8
(B6.5XFAD x BXD83)F1 m 67.78 11.949   3 6.899 0.1763 54.0, 75.33 1.71
(B6.5XFAD x BXD87)F1-ADtg f 45.2 26.414   5 11.813 0.5844 8.0, 80.67 0.82
(B6.5XFAD x BXD87)F1-ADtg m 51.47 11.732   5 5.2465 0.2279 37.33, 63.33 0.3
(B6.5XFAD x BXD89)F1-ADtg f 30.0 0.0   1   0.0 0.0 30.0, 30.0 -0.28
(B6.5XFAD x BXD99)F1-ADtg f 50.11 15.21   6 6.2096 0.3035 35.33, 76.0 1.17
(B6.5XFAD x BXD99)F1-ADtg m 55.6 22.255   5 9.9529 0.4003 27.33, 80.0 0.66
(B6.5XFAD x D2)F1-ADtg f 28.67 0.0   1   0.0 0.0 28.67, 28.67 -0.38
(B6.5XFAD x D2)F1-ADtg m 32.665 33.001   2   23.335 1.0103 9.33, 56.0 -1.31
(B6 x DBA/2J-Gpnmb+/SjJ)F1 f 54.33 17.632   4 8.8162 0.3245 38.0, 79.33 1.48
(B6 x DBA/2J-Gpnmb+/SjJ)F1 m 69.78 16.457   3 9.5014 0.2359 56.0, 88.0 1.88
C57BL/6J f 42.111 17.052   12 4.9225 0.4049 18.67, 76.0 0.59
C57BL/6J m 41.553 16.452   6 6.7165 0.3959 17.33, 61.33 -0.55


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 24.8325 9.4219676614 43.3653828244 6.2996171756
129S1/SvImJ 2 45.598 8.4272640691 62.1743143258 29.0216856742
A/J 1 22.918 8.4272640691 39.4943143258 6.3416856742
A/J 2 57.458 8.4272640691 74.0343143258 40.8816856742
AKR/J 1 45.2 8.4272640691 61.7763143258 28.6236856742
AKR/J 2 51.466 8.4272640691 68.0423143258 34.8896856742
ALR/LtJ 1 44.5825 6.6623372255 57.6872271201 31.4777728799
ALR/LtJ 2 49.2371428571 7.1223380837 63.2466854373 35.227600277
ALS/LtJ 1 35.05 7.6930043811 50.1820354609 19.9179645391
ALS/LtJ 2 44.4742857143 7.1223380837 58.4838282944 30.4647431341
BALB/cJ 1 16.4433333333 10.8795511312 37.8432631084 -4.9565964418
BALB/cJ 2 29.645 9.4219676614 48.1778828244 11.1121171756
BPH/2J 1 36.74 6.2813117743 49.0952552163 24.3847447837
BPH/2J 2 62.0 8.4272640691 78.5763143258 45.4236856742
BPL/1J 1 54.3325 9.4219676614 72.8653828244 35.7996171756
BPL/1J 2 69.7766666667 10.8795511312 91.1765964418 48.3767368916
BPN/3J 1 36.1116666667 7.6930043811 51.2437021276 20.9796312058
BPN/3J 2 38.936 8.4272640691 55.5123143258 22.3596856742
BTBR T+ Itpr3tf/J 1 34.8 8.4272640691 51.3763143258 18.2236856742
BTBR T+ Itpr3tf/J 2 49.1411111111 6.2813117743 61.4963663274 36.7858558948
BUB/BnJ 1 38.16625 6.6623372255 51.2709771201 25.0615228799
BUB/BnJ 2 45.667 5.9589755701 57.3882242668 33.9457757332
C3H/HeJ 1 28.2233333333 7.6930043811 43.3553687942 13.0912978724
C3H/HeJ 2 25.3316666667 7.6930043811 40.4637021276 10.1996312058
C57BL/6J 1 53.0016666667 7.6930043811 68.1337021276 37.8696312058
C57BL/6J 2 38.7628571429 7.1223380837 52.772399723 24.7533145627
C57BLKS/J 1 42.1108333333 5.4397755656 52.8107982209 31.4108684458
C57BLKS/J 2 41.5533333333 7.6930043811 56.6853687942 26.4212978724
C57BR/cdJ 1 31.2216666667 7.6930043811 46.3537021276 16.0896312058
C57BR/cdJ 2 42.8585714286 7.1223380837 56.8681140087 28.8490288484
C58/J 1 23.25 6.6623372255 36.3547271201 10.1452728799
C58/J 2 23.1675 9.4219676614 41.7003828244 4.6346171756
CAST/EiJ 1 51.775 7.6930043811 66.9070354609 36.6429645391
CAST/EiJ 2 47.5 9.4219676614 66.0328828244 28.9671171756
CBA/J 1 50.1116666667 7.6930043811 65.2437021276 34.9796312058
CBA/J 2 55.6 8.4272640691 72.1763143258 39.0236856742
CE/J 1 32.6666666667 7.6930043811 47.7987021276 17.5346312058
CE/J 2 60.5 9.4219676614 79.0328828244 41.9671171756
DBA/2J 1 27.2216666667 7.6930043811 42.3537021276 12.0896312058
DBA/2J 2 56.0957142857 7.1223380837 70.1052568659 42.0861717056
FVB/NJ 1 25.066 8.4272640691 41.6423143258 8.4896856742
FVB/NJ 2 62.8866666667 10.8795511312 84.2865964418 41.4867368916
I/LnJ 1 39.466 8.4272640691 56.0423143258 22.8896856742
I/LnJ 2 56.932 8.4272640691 73.5083143258 40.3556856742
KK/HlJ 1 11.704 8.4272640691 28.2803143258 -4.8723143258
KK/HlJ 2 32.5714285714 7.1223380837 46.5809711516 18.5618859913
LP/J 1 16.9528571429 7.1223380837 30.962399723 2.9433145627
LP/J 2 43.0377777778 6.2813117743 55.3930329941 30.6825225615
MA/MyJ 1 55.4433333333 7.6930043811 70.5753687942 40.3112978724
MA/MyJ 2 52.14 13.324674451 78.3494542402 25.9305457598
NOD/ShiLtJ 1 10.8883333333 7.6930043811 26.0203687942 -4.2437021276
NOD/ShiLtJ 2 40.8 8.4272640691 57.3763143258 24.2236856742
NON/ShiLtJ 1 45.0 7.6930043811 60.1320354609 29.8679645391
NON/ShiLtJ 2 67.7766666667 10.8795511312 89.1765964418 46.3767368916
NZB/BlNJ 1 41.4271428571 7.1223380837 55.4366854373 27.417600277
NZB/BlNJ 2 45.0 9.4219676614 63.5328828244 26.4671171756
PL/J 1 37.8883333333 7.6930043811 53.0203687942 22.7562978724
PL/J 2 32.445 7.6930043811 47.5770354609 17.3129645391
RBF/DnJ 1 43.2 8.4272640691 59.7763143258 26.6236856742
RBF/DnJ 2 57.11 7.6930043811 72.2420354609 41.9779645391
RIIIS/J 1 32.4433333333 7.6930043811 47.5753687942 17.3112978724
RIIIS/J 2 71.732 8.4272640691 88.3083143258 55.1556856742
SEA/GnJ 1 50.27 8.4272640691 66.8463143258 33.6936856742
SEA/GnJ 2 52.1914285714 7.1223380837 66.2009711516 38.1818859913
SJL/J 1 47.555 7.6930043811 62.6870354609 32.4229645391
SJL/J 2 44.8883333333 7.6930043811 60.0203687942 29.7562978724
SM/J 1 28.665 13.324674451 54.8744542402 2.4555457598
SM/J 2 53.334 8.4272640691 69.9103143258 36.7576856742
SWR/J 1 30.665 6.6623372255 43.7697271201 17.5602728799
SWR/J 2 45.0309090909 5.6816602763 56.2066579295 33.8551602523


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 35.21525 6.3204480518 47.6474857443 22.7830142557
A/J both 40.188 5.9589755701 51.9092242668 28.4667757332
AKR/J both 48.333 5.9589755701 60.0542242668 36.6117757332
ALR/LtJ both 46.9098214286 4.8763315383 56.5014995429 37.3181433142
ALS/LtJ both 39.7621428571 5.241898897 50.0728870167 29.4513986976
BALB/cJ both 23.0441666667 7.1961466673 37.1988897315 8.8894436019
BPH/2J both 49.37 5.2553224757 59.7071481571 39.0328518429
BPL/1J both 62.0545833333 7.1961466673 76.2093063981 47.8998602685
BPN/3J both 37.5238333333 5.7052847453 48.7460511825 26.3016154842
BTBR T+ Itpr3tf/J both 41.9705555556 5.2553224757 52.3077037127 31.6334073985
BUB/BnJ both 41.916625 4.4692316776 50.7075432001 33.1257067999
C3H/HeJ both 26.7775 5.4397755656 37.4774648875 16.0775351125
C57BL/6J both 45.8822619048 5.241898897 56.1930060643 35.5715177452
C57BLKS/J both 41.8320833333 4.7109838307 51.0985247455 32.5656419211
C57BR/cdJ both 37.0401190476 5.241898897 47.3508632072 26.7293748881
C58/J both 23.20875 5.7697532859 34.5577765957 11.8597234043
CAST/EiJ both 49.6375 6.0818539735 61.6004244227 37.6745755773
CBA/J both 52.8558333333 5.7052847453 64.0780511825 41.6336154842
CE/J both 46.5833333333 6.0818539735 58.546257756 34.6204089106
DBA/2J both 41.6586904762 5.241898897 51.9694346357 31.3479463166
FVB/NJ both 43.9763333333 6.880832299 57.5108373047 30.4418293619
I/LnJ both 48.199 5.9589755701 59.9202242668 36.4777757332
KK/HlJ both 22.1377142857 5.5169393568 32.9894593059 11.2859692655
LP/J both 29.9953174603 4.7482253891 39.3350125138 20.6556224069
MA/MyJ both 53.7916666667 7.6930043811 68.9237021276 38.6596312058
NOD/ShiLtJ both 25.8441666667 5.7052847453 37.0663845158 14.6219488175
NON/ShiLtJ both 56.3883333333 6.6623372255 69.4930604534 43.2836062132
NZB/BlNJ both 43.2135714286 5.9055307634 54.8296704843 31.5974723728
PL/J both 35.1666666667 5.4397755656 45.8666315542 24.4667017791
RBF/DnJ both 50.155 5.7052847453 61.3772178492 38.9327821508
RIIIS/J both 52.0876666667 5.7052847453 63.3098845158 40.8654488175
SEA/GnJ both 51.2307142857 5.5169393568 62.0824593059 40.3789692655
SJL/J both 46.2216666667 5.4397755656 56.9216315542 35.5217017791
SM/J both 40.9995 7.8829837136 56.5052222356 25.4937777644
SWR/J both 37.8479545455 4.3780132709 46.4594473747 29.2364617162




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA