Project measure / variable:   Project1202   Ymaze.TotalArmEntries_2_5XFAD_HFD

ID, description, units MPD:130359   Ymaze.TotalArmEntries_2_5XFAD_HFD   Ymaze.TotalArmEntries    2 5XFAD HFD  
Data set, strains Project1202   F1 AD-BXD   41 strains     sex: both
Procedure None
Ontology mappings


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  STRAIN COMPARISON PLOT
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Project1202 - Ymaze.TotalArmEntries 2 5XFAD HFD



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested41 strains39 strains
Mean of the strain means31.729   None 28.474   None
Median of the strain means30.842   None 28.087   None
SD of the strain means± 5.9238 ± 4.7838
Coefficient of variation (CV)0.1867 0.168
Min–max range of strain means18.5   –   44.053   None 18.238   –   40.286   None
Mean sample size per strain14.9   mice 16.2   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4991.7133 4991.7133 69.0537 < 0.0001
strain 36 27945.831 776.2731 10.7387 < 0.0001
sex:strain 36 5352.268 148.6741 2.0567 0.0003
Residuals 1146 82841.404 72.2874


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x BXD100)F1-ADtg f 26.875 6.7069   8 2.3712 0.2496 15.0, 35.0 -0.82
(B6.5XFAD x BXD113)F1 f 31.714 8.0329   14 2.1469 0.2533 19.0, 47.0 0.0
(B6.5XFAD x BXD113)F1 m 24.833 8.83   12 2.549 0.3556 11.0, 34.0 -0.76
(B6.5XFAD x BXD124)F1 f 28.483 7.9175   29 1.4702 0.278 17.0, 45.0 -0.55
(B6.5XFAD x BXD124)F1 m 27.913 8.328   23 1.7365 0.2984 11.0, 45.0 -0.12
(B6.5XFAD x BXD125)F1 f 44.053 8.4622   19 1.9414 0.1921 33.0, 64.0 2.08
(B6.5XFAD x BXD125)F1 m 34.467 7.9988   15 2.0653 0.2321 22.0, 46.0 1.25
(B6.5XFAD x BXD12)F1 f 31.846 7.1045   13 1.9704 0.2231 22.0, 44.0 0.02
(B6.5XFAD x BXD12)F1 m 33.45 10.002   20 2.2366 0.299 15.0, 54.0 1.04
(B6.5XFAD x BXD14)F1-ADtg f 34.158 11.261   19 2.5834 0.3297 17.0, 60.0 0.41
(B6.5XFAD x BXD14)F1-ADtg m 31.545 7.7258   22 1.6472 0.2449 17.0, 46.0 0.64
(B6.5XFAD x BXD152)F1 f 24.0 7.3847   16 1.8462 0.3077 13.0, 45.0 -1.3
(B6.5XFAD x BXD152)F1 m 18.238 5.949   21 1.2982 0.3262 8.0, 34.0 -2.14
(B6.5XFAD x BXD154)F1 f 33.947 6.5019   19 1.4916 0.1915 23.0, 44.0 0.37
(B6.5XFAD x BXD154)F1 m 32.091 10.023   22 2.137 0.3123 4.0, 48.0 0.76
(B6.5XFAD x BXD161)F1 f 30.375 9.3443   16 2.3361 0.3076 11.0, 54.0 -0.23
(B6.5XFAD x BXD161)F1 m 28.105 7.9225   19 1.8175 0.2819 6.0, 40.0 -0.08
(B6.5XFAD x BXD169)F1 f 31.55 11.646   20 2.6041 0.3691 11.0, 63.0 -0.03
(B6.5XFAD x BXD169)F1 m 27.75 7.0403   20 1.5743 0.2537 10.0, 39.0 -0.15
(B6.5XFAD x BXD16)F1-ADtg f 37.583 18.233   12 5.2635 0.4851 4.0, 71.0 0.99
(B6.5XFAD x BXD16)F1-ADtg m 30.231 11.062   13 3.0679 0.3659 14.0, 48.0 0.37
(B6.5XFAD x BXD19)F1 f 28.632 8.4077   19 1.9289 0.2937 17.0, 49.0 -0.52
(B6.5XFAD x BXD19)F1 m 22.4 7.7758   20 1.7387 0.3471 8.0, 41.0 -1.27
(B6.5XFAD x BXD28)F1 f 28.375 6.7811   24 1.3842 0.239 14.0, 42.0 -0.57
(B6.5XFAD x BXD28)F1 m 19.429 7.4408   28 1.4062 0.383 6.0, 32.0 -1.89
(B6.5XFAD x BXD31)F1 f 24.5 0.70711   2   0.5 0.0289 24.0, 25.0 -1.22
(B6.5XFAD x BXD31)F1 m 23.286 3.4503   7 1.3041 0.1482 19.0, 29.0 -1.08
(B6.5XFAD x BXD32)F1-ADtg f 39.2 4.3243   5 1.9339 0.1103 34.0, 45.0 1.26
(B6.5XFAD x BXD32)F1-ADtg m 33.375 8.3141   8 2.9395 0.2491 21.0, 49.0 1.02
(B6.5XFAD x BXD34)F1-ADtg f 34.0 5.5678   5 2.49 0.1638 27.0, 41.0 0.38
(B6.5XFAD x BXD34)F1-ADtg m 29.5 5.5767   6 2.2767 0.189 22.0, 38.0 0.21
(B6.5XFAD x BXD38)F1 f 30.476 6.0549   21 1.3213 0.1987 21.0, 45.0 -0.21
(B6.5XFAD x BXD38)F1 m 26.278 8.9166   18 2.1017 0.3393 15.0, 52.0 -0.46
(B6.5XFAD x BXD39)F1 f 39.357 8.7408   14 2.3361 0.2221 27.0, 57.0 1.29
(B6.5XFAD x BXD39)F1 m 25.9 4.8656   20 1.088 0.1879 10.0, 32.0 -0.54
(B6.5XFAD x BXD42)F1-ADtg f 39.0 8.579   6 3.5024 0.22 28.0, 51.0 1.23
(B6.5XFAD x BXD42)F1-ADtg m 28.25 11.927   4 5.9634 0.4222 12.0, 39.0 -0.05
(B6.5XFAD x BXD48a)F1 f 31.8 5.933   5 2.6533 0.1866 28.0, 42.0 0.01
(B6.5XFAD x BXD48a)F1 m 26.6 8.9051   5 3.9825 0.3348 17.0, 37.0 -0.39
(B6.5XFAD x BXD49)F1 f 21.0 0.0   1   0.0 0.0 21.0, 21.0 -1.81
(B6.5XFAD x BXD49)F1 m 30.667 4.8028   6 1.9607 0.1566 25.0, 38.0 0.46
(B6.5XFAD x BXD50)F1 f 29.588 6.9468   17 1.6848 0.2348 19.0, 42.0 -0.36
(B6.5XFAD x BXD50)F1 m 23.368 5.7369   19 1.3161 0.2455 9.0, 30.0 -1.07
(B6.5XFAD x BXD55)F1-ADtg f 41.05 9.7467   20 2.1794 0.2374 25.0, 56.0 1.57
(B6.5XFAD x BXD55)F1-ADtg m 40.286 10.379   21 2.2648 0.2576 20.0, 62.0 2.47
(B6.5XFAD x BXD60)F1-ADtg f 28.733 7.2651   15 1.8758 0.2528 15.0, 41.0 -0.51
(B6.5XFAD x BXD60)F1-ADtg m 32.562 9.1795   16 2.2949 0.2819 16.0, 52.0 0.85
(B6.5XFAD x BXD61)F1-ADtg f 25.615 5.1241   13 1.4212 0.2 19.0, 36.0 -1.03
(B6.5XFAD x BXD61)F1-ADtg m 25.167 7.545   24 1.5401 0.2998 9.0, 37.0 -0.69
(B6.5XFAD x BXD62)F1-ADtg f 29.0 8.5   17 2.0616 0.2931 14.0, 42.0 -0.46
(B6.5XFAD x BXD62)F1-ADtg m 22.857 5.6549   14 1.5113 0.2474 12.0, 30.0 -1.17
(B6.5XFAD x BXD65)F1-ADtg f 40.0 7.8994   21 1.7238 0.1975 26.0, 54.0 1.4
(B6.5XFAD x BXD65)F1-ADtg m 33.217 10.004   23 2.0861 0.3012 5.0, 53.0 0.99
(B6.5XFAD x BXD66)F1-ADtg f 35.471 12.506   17 3.0331 0.3526 16.0, 62.0 0.63
(B6.5XFAD x BXD66)F1-ADtg m 36.0 10.806   14 2.888 0.3002 19.0, 59.0 1.57
(B6.5XFAD x BXD68)F1-ADtg f 41.222 7.0005   18 1.65 0.1698 25.0, 52.0 1.6
(B6.5XFAD x BXD68)F1-ADtg m 30.174 10.044   23 2.0943 0.3329 9.0, 46.0 0.36
(B6.5XFAD x BXD73)F1 f 30.842 6.0852   19 1.396 0.1973 18.0, 43.0 -0.15
(B6.5XFAD x BXD73)F1 m 22.421 9.7143   19 2.2286 0.4333 5.0, 42.0 -1.27
(B6.5XFAD x BXD74)F1 f 28.652 7.6966   23 1.6048 0.2686 9.0, 40.0 -0.52
(B6.5XFAD x BXD74)F1 m 28.357 6.1969   14 1.6562 0.2185 17.0, 38.0 -0.02
(B6.5XFAD x BXD75)F1-ADtg f 32.273 9.2437   22 1.9708 0.2864 5.0, 45.0 0.09
(B6.5XFAD x BXD75)F1-ADtg m 28.087 6.4801   23 1.3512 0.2307 10.0, 38.0 -0.08
(B6.5XFAD x BXD77)F1-ADtg f 27.167 10.607   18 2.5 0.3904 9.0, 55.0 -0.77
(B6.5XFAD x BXD77)F1-ADtg m 33.118 9.0546   17 2.1961 0.2734 19.0, 56.0 0.97
(B6.5XFAD x BXD78)F1 f 18.5 0.70711   2   0.5 0.0382 18.0, 19.0 -2.23
(B6.5XFAD x BXD83)F1 f 27.526 8.0303   19 1.8423 0.2917 16.0, 45.0 -0.71
(B6.5XFAD x BXD83)F1 m 27.353 7.097   17 1.7213 0.2595 13.0, 41.0 -0.23
(B6.5XFAD x BXD87)F1-ADtg f 24.263 6.6654   19 1.5291 0.2747 12.0, 39.0 -1.26
(B6.5XFAD x BXD87)F1-ADtg m 24.857 7.5782   21 1.6537 0.3049 8.0, 42.0 -0.76
(B6.5XFAD x BXD89)F1-ADtg f 28.0 0.0   1   0.0 0.0 28.0, 28.0 -0.63
(B6.5XFAD x BXD89)F1-ADtg m 25.5 7.7782   2   5.5 0.305 20.0, 31.0 -0.62
(B6.5XFAD x BXD99)F1-ADtg f 40.0 7.4833   9 2.4944 0.1871 31.0, 57.0 1.4
(B6.5XFAD x BXD99)F1-ADtg m 31.263 9.3976   19 2.156 0.3006 4.0, 48.0 0.58
(B6.5XFAD x D2)F1-ADtg f 29.786 8.6929   14 2.3233 0.2918 12.0, 45.0 -0.33
(B6.5XFAD x D2)F1-ADtg m 27.625 4.8385   8 1.7107 0.1751 18.0, 34.0 -0.18
(B6 x DBA/2J-Gpnmb+/SjJ)F1 f 32.5 5.7203   10 1.8089 0.176 23.0, 40.0 0.13
(B6 x DBA/2J-Gpnmb+/SjJ)F1 m 26.857 8.9149   7 3.3695 0.3319 16.0, 38.0 -0.34
C57BL/6J f 39.786 9.6508   28 1.8238 0.2426 24.0, 62.0 1.36
C57BL/6J m 37.095 9.8788   21 2.1557 0.2663 23.0, 52.0 1.8


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 39.2 3.8023003059 46.6602507676 31.7397492324
129S1/SvImJ 2 33.375 3.0059823286 39.2728460854 27.4771539146
A/J 1 34.0 3.8023003059 41.4602507676 26.5397492324
A/J 2 29.5 3.4710094132 36.3102460501 22.6897539499
AKR/J 1 24.2631578947 1.950538901 28.0901857891 20.4361300004
AKR/J 2 24.8571428571 1.8553325729 28.4973724913 21.216913223
ALR/LtJ 1 28.4827586207 1.5788192672 31.5804591448 25.3850580966
ALR/LtJ 2 27.9130434783 1.7728316588 31.391403334 24.4346836225
ALS/LtJ 1 44.0526315789 1.950538901 47.8796594733 40.2256036846
ALS/LtJ 2 34.4666666667 2.1952591051 38.7738444556 30.1594888778
BALB/cJ 1 39.0 3.4710094132 45.8102460501 32.1897539499
BALB/cJ 2 28.25 4.2511009774 36.5908139228 19.9091860772
BPH/2J 1 29.5882352941 2.0620868653 33.6341243303 25.542346258
BPH/2J 2 23.3684210526 1.950538901 27.195448947 19.5413931583
BPL/1J 1 31.8461538462 2.3580865463 36.4728049658 27.2195027265
BPL/1J 2 33.45 1.9011501529 37.1801253838 29.7198746162
BPN/3J 1 31.55 1.9011501529 35.2801253838 27.8198746162
BPN/3J 2 27.75 1.9011501529 31.4801253838 24.0198746162
BTBR T+ Itpr3tf/J 1 34.1578947368 1.950538901 37.9849226312 30.3308668425
BTBR T+ Itpr3tf/J 2 31.5454545455 1.8126755474 35.1019895521 27.9889195388
BUB/BnJ 1 24.0 2.1255504887 28.1704069614 19.8295930386
BUB/BnJ 2 18.2380952381 1.8553325729 21.8783248723 14.5978656039
C3H/HeJ 1 41.05 1.9011501529 44.7801253838 37.3198746162
C3H/HeJ 2 40.2857142857 1.8553325729 43.9259439199 36.6454846515
C57BL/6J 1 28.7333333333 2.1952591051 33.0405111222 24.4261555444
C57BL/6J 2 32.5625 2.1255504887 36.7329069614 28.3920930386
C57BLKS/J 1 28.652173913 1.7728316588 32.1305337688 25.1738140573
C57BLKS/J 2 28.3571428571 2.2723090534 32.8154954323 23.898790282
C57BR/cdJ 1 39.3571428571 2.2723090534 43.8154954323 34.898790282
C57BR/cdJ 2 25.9 1.9011501529 29.6301253838 22.1698746162
C57L/J 1 39.7857142857 1.6067651406 42.9382456245 36.6331829469
C57L/J 2 37.0952380952 1.8553325729 40.7354677294 33.4550084611
C58/J 1 28.6315789474 1.950538901 32.4586068417 24.804551053
C58/J 2 22.4 1.9011501529 26.1301253838 18.6698746162
CAST/EiJ 1 37.5833333333 2.4543742936 42.3989044969 32.7677621697
CAST/EiJ 2 30.2307692308 2.3580865463 34.8574203504 25.6041181111
CBA/J 1 40.0 2.8340673183 45.5605426152 34.4394573848
CBA/J 2 31.2631578947 1.950538901 35.0901857891 27.4361300004
CE/J 1 33.9473684211 1.950538901 37.7743963154 30.1203405267
CE/J 2 32.0909090909 1.8126755474 35.6474440976 28.5343740843
DBA/2J 1 25.6153846154 2.3580865463 30.242035735 20.9887334957
DBA/2J 2 25.1666666667 1.7355047066 28.5717896917 21.7615436416
FVB/NJ 1 29.0 2.0620868653 33.0458890362 24.9541109638
FVB/NJ 2 22.8571428571 2.2723090534 27.3154954323 18.398790282
I/LnJ 1 24.5 6.0119646572 36.2956921708 12.7043078292
I/LnJ 2 23.2857142857 3.2135302812 29.5907769633 16.9806516081
KK/HlJ 1 31.7142857143 2.2723090534 36.1726382894 27.2559331392
KK/HlJ 2 24.8333333333 2.4543742936 29.6489044969 20.0177621697
LP/J 1 40.0 1.8553325729 43.6402296342 36.3597703658
LP/J 2 33.2173913043 1.7728316588 36.6957511601 29.7390314486
MA/MyJ 1 32.5 2.6886323304 37.7751939071 27.2248060929
MA/MyJ 2 26.8571428571 3.2135302812 33.1622055347 20.5520801795
NOD/ShiLtJ 1 32.2727272727 1.8126755474 35.8292622794 28.7161922661
NOD/ShiLtJ 2 28.0869565217 1.7728316588 31.5653163775 24.608596666
NON/ShiLtJ 1 30.8421052632 1.950538901 34.6691331575 27.0150773688
NON/ShiLtJ 2 22.4210526316 1.950538901 26.2480805259 18.5940247372
NZB/BlNJ 1 35.4705882353 2.0620868653 39.5164772714 31.4246991991
NZB/BlNJ 2 36.0 2.2723090534 40.4583525751 31.5416474249
NZW/LacJ 1 27.5263157895 1.950538901 31.3533436838 23.6992878951
NZW/LacJ 2 27.3529411765 2.0620868653 31.3988302126 23.3070521403
PL/J 1 27.1666666667 2.0039882191 31.0985640569 23.2347692764
PL/J 2 33.1176470588 2.0620868653 37.163536095 29.0717580227
RBF/DnJ 1 31.8 3.8023003059 39.2602507676 24.3397492324
RBF/DnJ 2 26.6 3.8023003059 34.0602507676 19.1397492324
RIIIS/J 1 30.375 2.1255504887 34.5454069614 26.2045930386
RIIIS/J 2 28.1052631579 1.950538901 31.9322910522 24.2782352635
SEA/GnJ 1 28.375 1.7355047066 31.7801230251 24.9698769749
SEA/GnJ 2 19.4285714286 1.6067651406 22.5811027674 16.2760400898
SJL/J 1 29.7857142857 2.2723090534 34.2440668608 25.3273617106
SJL/J 2 27.625 3.0059823286 33.5228460854 21.7271539146
SM/J 1 30.4761904762 1.8553325729 34.1164201104 26.835960842
SM/J 2 26.2777777778 2.0039882191 30.2096751681 22.3458803875
SWR/J 1 41.2222222222 2.0039882191 45.1541196125 37.2903248319
SWR/J 2 30.1739130435 1.7728316588 33.6522728992 26.6955531877


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 36.2875 2.423500432 41.04249553 31.53250447
A/J both 31.75 2.5741694759 36.8006136454 26.6993863546
AKR/J both 24.5601503759 1.3459997177 27.2010505205 21.9192502314
ALR/LtJ both 28.1979010495 1.1869711843 30.5267814577 25.8690206413
ALS/LtJ both 39.2596491228 1.4683123427 42.1405310628 36.3787671828
BALB/cJ both 33.625 2.7440738814 39.0089722361 28.2410277639
BPH/2J both 26.4783281734 1.4192255145 29.2628999805 23.6937563662
BPL/1J both 32.6480769231 1.5145085064 35.6195974077 29.6765564385
BPN/3J both 29.65 1.3443161652 32.2875969536 27.0124030464
BTBR T+ Itpr3tf/J both 32.8516746411 1.331389748 35.4639094965 30.2394397858
BUB/BnJ both 21.119047619 1.410693432 23.8868791716 18.3512160665
C3H/HeJ both 40.6678571429 1.3282159896 43.2738649694 38.0618493163
C57BL/6J both 30.6479166667 1.5278356766 33.6455855413 27.650247792
C57BLKS/J both 28.5046583851 1.4410343962 31.3320200073 25.6772967629
C57BR/cdJ both 32.6285714286 1.4813642646 35.5350617117 29.7220811455
C57L/J both 38.4404761905 1.2271871468 40.8482617723 36.0326906087
C58/J both 25.5157894737 1.3618896714 28.1878662822 22.8437126651
CAST/EiJ both 33.9070512821 1.7018023779 37.2460491188 30.5680534453
CBA/J both 35.6315789474 1.7202136182 39.0067003037 32.256457591
CE/J both 33.019138756 1.331389748 35.6313736113 30.4069039006
DBA/2J both 25.391025641 1.4639457595 28.2633401868 22.5187110953
FVB/NJ both 25.9285714286 1.5342417243 28.9388092006 22.9183336565
I/LnJ both 23.8928571429 3.4084635801 30.5803860056 17.2053282802
KK/HlJ both 28.2738095238 1.6723741812 31.5550681739 24.9925508737
LP/J both 36.6086956522 1.2830813543 39.1261476912 34.0912436131
MA/MyJ both 29.6785714286 2.0949654339 33.7889694058 25.5681734513
NOD/ShiLtJ both 30.1798418972 1.2677464978 32.667206393 27.6924774014
NON/ShiLtJ both 26.6315789474 1.3792392838 29.3376963233 23.9254615715
NZB/BlNJ both 35.7352941176 1.5342417243 38.7455318897 32.7250563456
NZW/LacJ both 27.439628483 1.4192255145 30.2242002901 24.6550566758
PL/J both 30.1421568627 1.4377213762 32.9630182197 27.3212955058
RBF/DnJ both 29.2 2.6886323304 34.4751939071 23.9248060929
RIIIS/J both 29.2401315789 1.4424429698 32.0702568733 26.4100062846
SEA/GnJ both 23.9017857143 1.1825471242 26.2219859566 21.581585472
SJL/J both 28.7053571429 1.8840991345 32.4020278116 25.0086864741
SM/J both 28.376984127 1.365487801 31.0561205959 25.697847658
SWR/J both 35.6980676329 1.3378061213 38.3228916447 33.073243621




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA