Project measure / variable:   Project1202   Ymaze.TotalArmEntries_6_5XFAD_Chow

ID, description, units MPD:130351   Ymaze.TotalArmEntries_6_5XFAD_Chow   Ymaze.TotalArmEntries    6 5XFAD Chow  
Data set, strains Project1202   F1 AD-BXD   52 strains     sex: both
Procedure None
Ontology mappings


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  STRAIN COMPARISON PLOT
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Project1202 - Ymaze.TotalArmEntries 6 5XFAD Chow



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested52 strains33 strains
Mean of the strain means21.158   None 20.176   None
Median of the strain means20.9   None 20.0   None
SD of the strain means± 5.7271 ± 4.9826
Coefficient of variation (CV)0.2707 0.247
Min–max range of strain means10.375   –   39.0   None 8.0   –   33.8   None
Mean sample size per strain8.4   mice 9.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 431.6596 431.6596 5.1687 0.0234
strain 31 11154.4827 359.822 4.3085 < 0.0001
sex:strain 31 5480.4923 176.7901 2.1169 0.0005
Residuals 590 49273.7645 83.5149


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x BXD100)F1-ADtg f 15.5 3.5355   2   2.5 0.2281 13.0, 18.0 -0.99
(B6.5XFAD x BXD101)F1 f 21.4 3.8471   5 1.7205 0.1798 17.0, 26.0 0.04
(B6.5XFAD x BXD 102)F1 f 21.0 1.4142   2   1.0 0.0673 20.0, 22.0 -0.03
(B6.5XFAD x BXD 102)F1 m 8.0 0.0   1   0.0 0.0 8.0, 8.0 -2.44
(B6.5XFAD x BXD113)F1 f 12.167 8.066   12 2.3285 0.663 1.0, 27.0 -1.57
(B6.5XFAD x BXD113)F1 m 19.9 7.8095   10 2.4696 0.3924 6.0, 30.0 -0.06
(B6.5XFAD x BXD124)F1 f 17.75 7.986   20 1.7857 0.4499 7.0, 35.0 -0.6
(B6.5XFAD x BXD124)F1 m 17.333 5.0859   6 2.0763 0.2934 11.0, 25.0 -0.57
(B6.5XFAD x BXD125)F1 f 25.222 7.6612   9 2.5537 0.3037 15.0, 41.0 0.71
(B6.5XFAD x BXD125)F1 m 24.455 6.5017   11 1.9604 0.2659 14.0, 34.0 0.86
(B6.5XFAD x BXD12)F1 f 27.647 13.21   17 3.2038 0.4778 6.0, 53.0 1.13
(B6.5XFAD x BXD12)F1 m 17.571 5.4732   14 1.4628 0.3115 5.0, 26.0 -0.52
(B6.5XFAD x BXD14)F1-ADtg f 13.0 1.4142   2   1.0 0.1088 12.0, 14.0 -1.42
(B6.5XFAD x BXD14)F1-ADtg m 21.733 8.1981   15 2.1168 0.3772 10.0, 36.0 0.31
(B6.5XFAD x BXD152)F1 f 19.5 8.2401   6 3.364 0.4226 8.0, 31.0 -0.29
(B6.5XFAD x BXD152)F1 m 12.4 4.3359   5 1.9391 0.3497 7.0, 19.0 -1.56
(B6.5XFAD x BXD154)F1 f 27.444 10.783   9 3.5944 0.3929 7.0, 42.0 1.1
(B6.5XFAD x BXD154)F1 m 18.667 5.8195   6 2.3758 0.3118 10.0, 26.0 -0.3
(B6.5XFAD x BXD161)F1 f 19.5 6.6762   8 2.3604 0.3424 10.0, 33.0 -0.29
(B6.5XFAD x BXD161)F1 m 22.875 7.4911   16 1.8728 0.3275 7.0, 36.0 0.54
(B6.5XFAD x BXD169)F1 f 25.0 11.874   7 4.4881 0.475 16.0, 49.0 0.67
(B6.5XFAD x BXD169)F1 m 26.5 7.064   6 2.8839 0.2666 17.0, 36.0 1.27
(B6.5XFAD x BXD16)F1-ADtg f 31.0 7.9373   3 4.5826 0.256 22.0, 37.0 1.72
(B6.5XFAD x BXD16)F1-ADtg m 26.9 10.093   10 3.1918 0.3752 17.0, 51.0 1.35
(B6.5XFAD x BXD172)F1 f 20.8 5.933   5 2.6533 0.2852 15.0, 30.0 -0.06
(B6.5XFAD x BXD19)F1 f 14.667 7.2629   9 2.421 0.4952 8.0, 30.0 -1.13
(B6.5XFAD x BXD19)F1 m 21.75 5.3151   4 2.6575 0.2444 16.0, 28.0 0.32
(B6.5XFAD x BXD22)F1-ADtg f 25.0 14.405   5 6.442 0.5762 11.0, 44.0 0.67
(B6.5XFAD x BXD28)F1 f 20.077 7.7617   13 2.1527 0.3866 11.0, 38.0 -0.19
(B6.5XFAD x BXD28)F1 m 17.833 6.3794   12 1.8416 0.3577 9.0, 34.0 -0.47
(B6.5XFAD x BXD31)F1 f 25.6 15.339   5 6.86 0.5992 11.0, 50.0 0.78
(B6.5XFAD x BXD32)F1-ADtg f 19.5 8.6987   4 4.3493 0.4461 7.0, 27.0 -0.29
(B6.5XFAD x BXD33)F1 f 15.727 8.7532   11 2.6392 0.5566 5.0, 36.0 -0.95
(B6.5XFAD x BXD34)F1-ADtg f 14.667 6.6583   3 3.8442 0.454 9.0, 22.0 -1.13
(B6.5XFAD x BXD38)F1 f 29.8 16.047   10 5.0746 0.5385 11.0, 57.0 1.51
(B6.5XFAD x BXD38)F1 m 22.5 7.8376   8 2.771 0.3483 13.0, 34.0 0.47
(B6.5XFAD x BXD39)F1 f 13.429 9.8125   7 3.7088 0.7307 4.0, 33.0 -1.35
(B6.5XFAD x BXD39)F1 m 22.111 11.795   9 3.9315 0.5334 5.0, 40.0 0.39
(B6.5XFAD x BXD42)F1-ADtg f 23.0 2.0   3 1.1547 0.087 21.0, 25.0 0.32
(B6.5XFAD x BXD48a)F1 f 15.5 12.042   4 6.0208 0.7769 4.0, 32.0 -0.99
(B6.5XFAD x BXD49)F1 f 12.0 8.165   4 4.0825 0.6804 -1.6
(B6.5XFAD x BXD50)F1 f 18.5 7.5782   8 2.6793 0.4096 8.0, 31.0 -0.46
(B6.5XFAD x BXD50)F1 m 16.467 5.4231   15 1.4002 0.3293 6.0, 23.0 -0.74
(B6.5XFAD x BXD51)F1-ADtg f 20.5 6.364   2   4.5 0.3104 16.0, 25.0 -0.11
(B6.5XFAD x BXD53)F1 f 15.333 5.3914   6 2.201 0.3516 9.0, 21.0 -1.02
(B6.5XFAD x BXD55)F1-ADtg f 39.0 20.543   5 9.1869 0.5267 12.0, 62.0 3.12
(B6.5XFAD x BXD55)F1-ADtg m 21.25 8.1548   8 2.8831 0.3838 13.0, 34.0 0.22
(B6.5XFAD x BXD60)F1-ADtg f 18.714 4.2706   7 1.6141 0.2282 13.0, 25.0 -0.43
(B6.5XFAD x BXD60)F1-ADtg m 19.667 3.6401   9 1.2134 0.1851 14.0, 26.0 -0.1
(B6.5XFAD x BXD61)F1-ADtg f 23.111 7.4907   9 2.4969 0.3241 12.0, 37.0 0.34
(B6.5XFAD x BXD61)F1-ADtg m 21.556 5.9184   9 1.9728 0.2746 12.0, 32.0 0.28
(B6.5XFAD x BXD62)F1-ADtg f 15.143 7.2899   7 2.7553 0.4814 3.0, 26.0 -1.05
(B6.5XFAD x BXD62)F1-ADtg m 19.667 4.8442   6 1.9777 0.2463 15.0, 28.0 -0.1
(B6.5XFAD x BXD64)F1 f 18.7 4.111   10 1.3 0.2198 12.0, 24.0 -0.43
(B6.5XFAD x BXD65a)F1 f 26.786 9.0484   14 2.4183 0.3378 13.0, 40.0 0.98
(B6.5XFAD x BXD65)F1-ADtg f 31.538 12.313   13 3.4149 0.3904 13.0, 52.0 1.81
(B6.5XFAD x BXD65)F1-ADtg m 33.8 9.5893   10 3.0324 0.2837 22.0, 50.0 2.73
(B6.5XFAD x BXD66)F1-ADtg f 25.909 9.181   11 2.7682 0.3544 7.0, 37.0 0.83
(B6.5XFAD x BXD66)F1-ADtg m 20.444 10.026   9 3.3421 0.4904 3.0, 40.0 0.05
(B6.5XFAD x BXD68)F1-ADtg f 24.786 10.482   14 2.8014 0.4229 10.0, 46.0 0.63
(B6.5XFAD x BXD68)F1-ADtg m 20.0 6.4031   5 2.8636 0.3202 9.0, 25.0 -0.04
(B6.5XFAD x BXD70)F1-ADtg f 24.75 8.6168   4 4.3084 0.3482 14.0, 35.0 0.63
(B6.5XFAD x BXD73)F1 f 21.071 8.3709   14 2.2372 0.3973 3.0, 33.0 -0.02
(B6.5XFAD x BXD73)F1 m 21.444 8.3832   9 2.7944 0.3909 11.0, 34.0 0.25
(B6.5XFAD x BXD74)F1 f 18.444 8.6474   9 2.8825 0.4688 5.0, 31.0 -0.47
(B6.5XFAD x BXD74)F1 m 14.222 8.0743   9 2.6914 0.5677 5.0, 30.0 -1.2
(B6.5XFAD x BXD75)F1-ADtg f 18.4 10.013   15 2.5853 0.5442 4.0, 37.0 -0.48
(B6.5XFAD x BXD75)F1-ADtg m 16.727 6.9006   11 2.0806 0.4125 7.0, 32.0 -0.69
(B6.5XFAD x BXD77)F1-ADtg f 22.333 10.404   9 3.4681 0.4659 7.0, 39.0 0.21
(B6.5XFAD x BXD77)F1-ADtg m 25.0 9.654   6 3.9412 0.3862 12.0, 35.0 0.97
(B6.5XFAD x BXD78)F1 f 15.5 8.7369   4 4.3684 0.5637 6.0, 27.0 -0.99
(B6.5XFAD x BXD83)F1 f 10.375 4.3732   8 1.5462 0.4215 5.0, 18.0 -1.88
(B6.5XFAD x BXD83)F1 m 14.25 5.1235   4 2.5617 0.3595 9.0, 21.0 -1.19
(B6.5XFAD x BXD87)F1-ADtg f 17.875 12.93   16 3.2325 0.7234 3.0, 51.0 -0.57
(B6.5XFAD x BXD87)F1-ADtg m 26.125 7.4726   8 2.642 0.286 18.0, 38.0 1.19
(B6.5XFAD x BXD89)F1-ADtg f 25.4 8.0808   5 3.6139 0.3181 15.0, 35.0 0.74
(B6.5XFAD x BXD98)F1 f 24.0 5.6569   2   4.0 0.2357 20.0, 28.0 0.5
(B6.5XFAD x BXD99)F1-ADtg f 23.923 12.855   13 3.5653 0.5373 3.0, 48.0 0.48
(B6.5XFAD x BXD99)F1-ADtg m 26.231 8.0845   13 2.2422 0.3082 16.0, 45.0 1.22
(B6.5XFAD x D2)F1-ADtg f 27.636 10.717   11 3.2313 0.3878 14.0, 45.0 1.13
(B6.5XFAD x D2)F1-ADtg m 17.0 4.8166   6 1.9664 0.2833 10.0, 23.0 -0.64
(B6 x DBA/2J-Gpnmb+/SjJ)F1 f 22.842 12.006   19 2.7543 0.5256 5.0, 49.0 0.29
(B6 x DBA/2J-Gpnmb+/SjJ)F1 m 14.0 6.8678   25 1.3736 0.4906 6.0, 34.0 -1.24
C57BL/6J f 23.733 8.8274   15 2.2792 0.3719 10.0, 43.0 0.45
C57BL/6J m 17.44 10.666   25 2.1331 0.6116 -0.55


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 39.0 4.0869268443 47.0266953213 30.9733046787
129S1/SvImJ 2 21.25 3.2309993646 27.5956598249 14.9043401751
A/J 1 18.7142857143 3.4540836112 25.4980814165 11.9304900121
A/J 2 19.6666666667 3.0462154143 25.6494121243 13.683921209
AKR/J 1 12.1666666667 2.6380999342 17.3478762174 6.9854571159
AKR/J 2 19.9 2.8898936858 25.5757306922 14.2242693078
ALR/LtJ 1 19.5 3.7308367058 26.8273368161 12.1726631839
ALR/LtJ 2 12.4 4.0869268443 20.4266953213 4.3733046787
ALS/LtJ 1 27.4444444444 3.0462154143 33.4271899021 21.4616989868
ALS/LtJ 2 18.6666666667 3.7308367058 25.9940034828 11.3393298505
BALB/cJ 1 23.1111111111 3.0462154143 29.0938565688 17.1283656534
BALB/cJ 2 21.5555555556 3.0462154143 27.5383010132 15.5728100979
BPH/2J 1 19.5 3.2309993646 25.8456598249 13.1543401751
BPH/2J 2 22.875 2.2846615607 27.3620590933 18.3879409067
BPL/1J 1 25.2222222222 3.0462154143 31.2049676799 19.2394767645
BPL/1J 2 24.4545454545 2.7554055163 29.8661423362 19.0429485729
BPN/3J 1 29.8 2.8898936858 35.4757306922 24.1242693078
BPN/3J 2 22.5 3.2309993646 28.8456598249 16.1543401751
BTBR T+ Itpr3tf/J 1 13.0 6.4619987292 25.6913196497 0.3086803503
BTBR T+ Itpr3tf/J 2 21.7333333333 2.3595883137 26.3675480378 17.0991186289
BUB/BnJ 1 25.0 3.4540836112 31.7837957022 18.2162042978
BUB/BnJ 2 26.5 3.7308367058 33.8273368161 19.1726631839
C3H/HeJ 1 15.1428571429 3.4540836112 21.926652845 8.3590614407
C3H/HeJ 2 19.6666666667 3.7308367058 26.9940034828 12.3393298505
C57BL/6J 1 31.5384615385 2.5346044321 36.5164066575 26.5605164195
C57BL/6J 2 33.8 2.8898936858 39.4757306922 28.1242693078
C57BR/cdJ 1 23.7333333333 2.3595883137 28.3675480378 19.0991186289
C57BR/cdJ 2 17.44 1.8277292486 21.0296472746 13.8503527254
C58/J 1 13.4285714286 3.4540836112 20.2123671307 6.6447757264
C58/J 2 22.1111111111 3.0462154143 28.0938565688 16.1283656534
CAST/EiJ 1 31.0 5.2761998683 41.3624191014 20.6375808986
CAST/EiJ 2 26.9 2.8898936858 32.5757306922 21.2242693078
CBA/J 1 27.6470588235 2.2164472785 32.0001455506 23.2939720965
CBA/J 2 17.5714285714 2.4424059443 22.3682965146 12.7745606282
CE/J 1 14.6666666667 3.0462154143 20.6494121243 8.683921209
CE/J 2 21.75 4.5693231214 30.7241181865 12.7758818135
DBA/2J 1 25.9090909091 2.7554055163 31.3206877907 20.4974940275
DBA/2J 2 20.4444444444 3.0462154143 26.4271899021 14.4616989868
FVB/NJ 1 24.7857142857 2.4424059443 29.5825822289 19.9888463425
FVB/NJ 2 20.0 4.0869268443 28.0266953213 11.9733046787
I/LnJ 1 18.4444444444 3.0462154143 24.4271899021 12.4616989868
I/LnJ 2 14.2222222222 3.0462154143 20.2049676799 8.2394767645
KK/HlJ 1 17.75 2.0434634221 21.7633476606 13.7366523394
KK/HlJ 2 17.3333333333 3.7308367058 24.6606701495 10.0059965172
LP/J 1 18.4 2.3595883137 23.0342147044 13.7657852956
LP/J 2 16.7272727273 2.7554055163 22.1388696089 11.3156758456
MA/MyJ 1 18.5 3.2309993646 24.8456598249 12.1543401751
MA/MyJ 2 16.4666666667 2.3595883137 21.1008813711 11.8324519622
NOD/ShiLtJ 1 23.9230769231 2.5346044321 28.9010220421 18.9451318041
NOD/ShiLtJ 2 26.2307692308 2.5346044321 31.2087143498 21.2528241118
NZB/BlNJ 1 22.3333333333 3.0462154143 28.316078791 16.3505878757
NZB/BlNJ 2 25.0 3.7308367058 32.3273368161 17.6726631839
PL/J 1 27.6363636364 2.7554055163 33.047960518 22.2247667547
PL/J 2 17.0 3.7308367058 24.3273368161 9.6726631839
RIIIS/J 1 20.0769230769 2.5346044321 25.0548681959 15.0989779579
RIIIS/J 2 17.8333333333 2.6380999342 23.0145428841 12.6521237826
SEA/GnJ 1 21.0714285714 2.4424059443 25.8682965146 16.2745606282
SEA/GnJ 2 21.4444444444 3.0462154143 27.4271899021 15.4616989868
SJL/J 1 22.8421052632 2.0965492344 26.9597130824 18.724497444
SJL/J 2 14.0 1.8277292486 17.5896472746 10.4103527254
SM/J 1 10.375 3.2309993646 16.7206598249 4.0293401751
SM/J 2 14.25 4.5693231214 23.2241181865 5.2758818135
SWR/J 1 17.875 2.2846615607 22.3620590933 13.3879409067
SWR/J 2 26.125 3.2309993646 32.4706598249 19.7793401751


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 30.125 2.6049149662 35.2410345091 25.0089654909
A/J both 19.1904761905 2.3027224075 23.7130066586 14.6679457224
AKR/J both 16.0333333333 1.9564672741 19.8758211765 12.1908454902
ALR/LtJ both 15.95 2.7668625533 21.384098421 10.515901579
ALS/LtJ both 23.0555555556 2.4082447382 27.7853311324 18.3257799787
BALB/cJ both 22.3333333333 2.1539995764 26.5637732166 18.1028934501
BPH/2J both 21.1875 1.9785749506 25.073407163 17.301592837
BPL/1J both 24.8383838384 2.0537580133 28.8719500031 20.8048176737
BPN/3J both 26.15 2.1674202643 30.4067980191 21.8932019809
BTBR T+ Itpr3tf/J both 17.3666666667 3.4396614872 24.1221374197 10.6111959137
BUB/BnJ both 25.75 2.5421367055 30.7427384506 20.7572615494
C3H/HeJ both 17.4047619048 2.5421367055 22.3975003554 12.4120234541
C57BL/6J both 32.6692307692 1.9219589708 36.4439445497 28.8945169888
C57BR/cdJ both 20.5866666667 1.4923346823 23.5176013931 17.6557319402
C58/J both 17.7698412698 2.3027224075 22.292371738 13.2473108017
CAST/EiJ both 28.95 3.0078967139 34.857487802 23.042512198
CBA/J both 22.6092436975 1.6490895469 25.8480438657 19.3704435293
CE/J both 18.2083333333 2.7458214681 23.6011072123 12.8155594544
DBA/2J both 23.1767676768 2.0537580133 27.2103338415 19.1432015121
FVB/NJ both 22.3928571429 2.3805628445 27.068265677 17.7174486087
I/LnJ both 16.3333333333 2.1539995764 20.5637732166 12.1028934501
KK/HlJ both 17.5416666667 2.1269041635 21.7188913513 13.3644419821
LP/J both 17.5636363636 1.8138299651 21.1259855442 14.0012871831
MA/MyJ both 17.4833333333 2.000438321 21.4121800006 13.5544866661
NOD/ShiLtJ both 25.0769230769 1.7922359815 28.5968618269 21.5569843269
NZB/BlNJ both 23.6666666667 2.4082447382 28.3964422435 18.9368910898
PL/J both 22.3181818182 2.3190193016 26.8727192707 17.7636443656
RIIIS/J both 18.9551282051 1.8291931889 22.5476506482 15.362605762
SEA/GnJ both 21.2579365079 1.9522279034 25.0920982571 17.4237747587
SJL/J both 18.4210526316 1.390693433 21.1523646656 15.6897405976
SM/J both 12.3125 2.7981275293 17.8080026121 6.8169973879
SWR/J both 22.0 1.9785749506 25.885907163 18.114092837




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA