Project measure / variable:   Project1202   Ymaze.Speed_3_5XFAD_HFD

ID, description, units MPD:130341   Ymaze.Speed_3_5XFAD_HFD   Ymaze.Speed    3 5XFAD HFD  
Data set, strains Project1202   F1 AD-BXD   30 strains     sex: both
Procedure None
Ontology mappings


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  STRAIN COMPARISON PLOT
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Project1202 - Ymaze.Speed 3 5XFAD HFD



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested24 strains23 strains
Mean of the strain means0.02341   None 0.01942   None
Median of the strain means0.02143   None 0.02   None
SD of the strain means± 0.00684432 ± 0.00767295
Coefficient of variation (CV)0.2924 0.3952
Min–max range of strain means0.01   –   0.03667   None 0.01   –   0.04   None
Mean sample size per strain2.9   mice 3.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0001 0.0001 0.8932 0.3478
strain 10 0.0032 0.0003 3.994 0.0002
sex:strain 10 0.0005 0.0 0.5759 0.8283
Residuals 72 0.0058 0.0001


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x BXD124)F1 m 0.02333 0.0057735   3 0.00333333 0.2474 0.02, 0.03 0.51
(B6.5XFAD x BXD125)F1 f 0.035 0.00707107   2   0.005 0.202 0.03, 0.04 1.69
(B6.5XFAD x BXD125)F1 m 0.02333 0.0057735   3 0.00333333 0.2474 0.02, 0.03 0.51
(B6.5XFAD x BXD12)F1 f 0.03167 0.00752773   6 0.00307318 0.2377 0.02, 0.04 1.21
(B6.5XFAD x BXD12)F1 m 0.034 0.01342   5 0.006 0.3946 0.02, 0.05 1.9
(B6.5XFAD x BXD14)F1-ADtg f 0.03 0.0   2   0.0 0.0 0.03, 0.03 0.96
(B6.5XFAD x BXD14)F1-ADtg m 0.02143 0.00690066   7 0.0026082 0.322 0.01, 0.03 0.26
(B6.5XFAD x BXD152)F1 f 0.03 0.0   1   0.0 0.0 0.03, 0.03 0.96
(B6.5XFAD x BXD152)F1 m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -1.23
(B6.5XFAD x BXD154)F1 f 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.5
(B6.5XFAD x BXD161)F1 m 0.02 0.0   1   0.0 0.0 0.02, 0.02 0.08
(B6.5XFAD x BXD169)F1 f 0.025 0.00707107   2   0.005 0.2828 0.02, 0.03 0.23
(B6.5XFAD x BXD169)F1 m 0.02 0.00816497   4 0.00408248 0.4082 0.01, 0.03 0.08
(B6.5XFAD x BXD16)F1-ADtg f 0.01333 0.0057735   3 0.00333333 0.433 0.01, 0.02 -1.47
(B6.5XFAD x BXD16)F1-ADtg m 0.04 0.0   1   0.0 0.0 0.04, 0.04 2.68
(B6.5XFAD x BXD19)F1 m 0.02 0.0   1   0.0 0.0 0.02, 0.02 0.08
(B6.5XFAD x BXD28)F1 f 0.02143 0.00899735   7 0.00340068 0.4199 0.01, 0.03 -0.29
(B6.5XFAD x BXD28)F1 m 0.01 1.6463612699567982e-10   3 9.505271223929317e-11 0.0 0.01, 0.01 -1.23
(B6.5XFAD x BXD31)F1 f 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.5
(B6.5XFAD x BXD38)F1 m 0.015 0.00707107   2   0.005 0.4714 0.01, 0.02 -0.58
(B6.5XFAD x BXD39)F1 f 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.5
(B6.5XFAD x BXD39)F1 m 0.01 1.6463612699567982e-10   3 9.505271223929317e-11 0.0 0.01, 0.01 -1.23
(B6.5XFAD x BXD49)F1 m 0.02 0.0   1   0.0 0.0 0.02, 0.02 0.08
(B6.5XFAD x BXD50)F1 f 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.5
(B6.5XFAD x BXD55)F1-ADtg f 0.025 0.01915   4 0.00957427 0.7659 0.01, 0.05 0.23
(B6.5XFAD x BXD55)F1-ADtg m 0.0225 0.00957427   4 0.00478714 0.4255 0.01, 0.03 0.4
(B6.5XFAD x BXD61)F1-ADtg f 0.01556 0.0113   9 0.00376796 0.7267 -1.15
(B6.5XFAD x BXD61)F1-ADtg m 0.01667 0.0057735   3 0.00333333 0.3464 0.01, 0.02 -0.36
(B6.5XFAD x BXD62)F1-ADtg f 0.01 0.0   1   0.0 0.0 0.01, 0.01 -1.96
(B6.5XFAD x BXD62)F1-ADtg m 0.0125 0.005   4 0.0025 0.4 0.01, 0.02 -0.9
(B6.5XFAD x BXD66)F1-ADtg f 0.01667 0.0057735   3 0.00333333 0.3464 0.01, 0.02 -0.98
(B6.5XFAD x BXD66)F1-ADtg m 0.01 0.0   2   0.0 0.0 0.01, 0.01 -1.23
(B6.5XFAD x BXD68)F1-ADtg f 0.03 0.0   1   0.0 0.0 0.03, 0.03 0.96
(B6.5XFAD x BXD73)F1 m 0.012 0.0083666   5 0.00374166 0.6972 -0.97
(B6.5XFAD x BXD74)F1 f 0.0225 0.005   4 0.0025 0.2222 0.02, 0.03 -0.13
(B6.5XFAD x BXD74)F1 m 0.02 0.0   1   0.0 0.0 0.02, 0.02 0.08
(B6.5XFAD x BXD78)F1 f 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.5
(B6.5XFAD x BXD83)F1 f 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.5
(B6.5XFAD x BXD87)F1-ADtg f 0.03667 0.0057735   3 0.00333333 0.1575 0.03, 0.04 1.94
(B6.5XFAD x BXD89)F1-ADtg f 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.5
(B6.5XFAD x BXD89)F1-ADtg m 0.015 0.00707107   2   0.005 0.4714 0.01, 0.02 -0.58
(B6.5XFAD x BXD99)F1-ADtg f 0.0325 0.005   4 0.0025 0.1538 0.03, 0.04 1.33
(B6.5XFAD x BXD99)F1-ADtg m 0.02667 0.00516398   6 0.00210819 0.1936 0.02, 0.03 0.95
(B6 x DBA/2J-Gpnmb+/SjJ)F1 f 0.025 0.0057735   4 0.00288675 0.2309 0.02, 0.03 0.23
(B6 x DBA/2J-Gpnmb+/SjJ)F1 m 0.02667 0.0057735   3 0.00333333 0.2165 0.02, 0.03 0.95
C57BL/6J f 0.02143 0.00899735   7 0.00340068 0.4199 0.01, 0.03 -0.29
C57BL/6J m 0.0175 0.00957427   4 0.00478714 0.5471 0.01, 0.03 -0.25


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 0.0155555556 0.0029937431 0.0215234733 0.0095876378
129S1/SvImJ 2 0.0166666667 0.0051853151 0.0270034034 0.0063299299
A/J 1 0.0166666667 0.0051853151 0.0270034034 0.0063299299
A/J 2 0.01 0.0063506881 0.0226598653 -0.0026598653
BALB/cJ 1 0.0325 0.0044906146 0.0414518766 0.0235481234
BALB/cJ 2 0.0266666667 0.0036665715 0.0339758433 0.01935749
BTBR T+ Itpr3tf/J 1 0.03 0.0063506881 0.0426598653 0.0173401347
BTBR T+ Itpr3tf/J 2 0.0214285714 0.0033945856 0.0281955541 0.0146615888
C3H/HeJ 1 0.0316666667 0.0036665715 0.0389758433 0.02435749
C3H/HeJ 2 0.034 0.0040165278 0.0420068018 0.0259931982
C57BL/6J 1 0.025 0.0044906146 0.0339518766 0.0160481234
C57BL/6J 2 0.0266666667 0.0051853151 0.0370034034 0.0163299299
CAST/EiJ 1 0.025 0.0044906146 0.0339518766 0.0160481234
CAST/EiJ 2 0.0225 0.0044906146 0.0314518766 0.0135481234
DBA/2J 1 0.035 0.0063506881 0.0476598653 0.0223401347
DBA/2J 2 0.0233333333 0.0051853151 0.0336700701 0.0129965966
FVB/NJ 1 0.025 0.0063506881 0.0376598653 0.0123401347
FVB/NJ 2 0.02 0.0044906146 0.0289518766 0.0110481234
LP/J 1 0.0214285714 0.0033945856 0.0281955541 0.0146615888
LP/J 2 0.01 0.0051853151 0.0203367367 -0.0003367367
NZB/BlNJ 1 0.0214285714 0.0033945856 0.0281955541 0.0146615888
NZB/BlNJ 2 0.0175 0.0044906146 0.0264518766 0.0085481234


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.0161111111 0.0029937431 0.0220790288 0.0101431934
A/J both 0.0133333333 0.0040993515 0.0215052412 0.0051614254
BALB/cJ both 0.0295833333 0.0028986793 0.0353617448 0.0238049218
BTBR T+ Itpr3tf/J both 0.0257142857 0.0036005017 0.0328917547 0.0185368167
C3H/HeJ both 0.0328333333 0.0027192022 0.0382539638 0.0274127029
C57BL/6J both 0.0258333333 0.0034297636 0.032670442 0.0189962246
CAST/EiJ both 0.02375 0.003175344 0.0300799326 0.0174200674
DBA/2J both 0.0291666667 0.0040993515 0.0373385746 0.0209947588
FVB/NJ both 0.0225 0.0038889863 0.0302525525 0.0147474475
LP/J both 0.0157142857 0.0030988185 0.0218916674 0.009536904
NZB/BlNJ both 0.0194642857 0.0028146417 0.0250751713 0.0138534001




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA