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Project measure / variable:   Project1202   Ymaze.Speed_3_5XFAD_Chow

ID, description, units MPD:130331   Ymaze.Speed_3_5XFAD_Chow   Ymaze.Speed    3 5XFAD Chow  
Data set, strains Project1202   F1 AD-BXD   54 strains     sex: both
Procedure None
Ontology mappings


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  STRAIN COMPARISON PLOT
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Project1202 - Ymaze.Speed 3 5XFAD Chow



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested50 strains31 strains
Mean of the strain means0.0182   None 0.02096   None
Median of the strain means0.01809   None 0.02   None
SD of the strain means± 0.00448672 ± 0.00863047
Coefficient of variation (CV)0.2465 0.4118
Min–max range of strain means0.01   –   0.03   None 0.00714286   –   0.04   None
Mean sample size per strain8.5   mice 3.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0008 0.0008 13.732 0.0003
strain 17 0.0041 0.0002 4.2768 < 0.0001
sex:strain 17 0.0019 0.0001 1.9184 0.0177
Residuals 219 0.0125 0.0001


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
(B6.5XFAD x BXD100)F1-ADtg f 0.01 0.0   2   0.0 0.0 0.01, 0.01 -1.83
(B6.5XFAD x BXD101)F1 f 0.01429 0.00534522   7 0.00202031 0.3742 0.01, 0.02 -0.87
(B6.5XFAD x BXD 102)F1 f 0.02 0.0   1   0.0 0.0 0.02, 0.02 0.4
(B6.5XFAD x BXD113)F1 f 0.01333 0.00778499   12 0.00224733 0.5839 -1.09
(B6.5XFAD x BXD113)F1 m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.11
(B6.5XFAD x BXD124)F1 f 0.01478 0.00510754   23 0.001065 0.3455 0.01, 0.02 -0.76
(B6.5XFAD x BXD124)F1 m 0.04 0.0   1   0.0 0.0 0.04, 0.04 2.21
(B6.5XFAD x BXD125)F1 f 0.02375 0.00744024   8 0.00263052 0.3133 0.02, 0.04 1.24
(B6.5XFAD x BXD12)F1 f 0.0225 0.00707107   8 0.0025 0.3143 0.01, 0.03 0.96
(B6.5XFAD x BXD14)F1-ADtg f 0.02889 0.00600925   9 0.00200308 0.208 0.02, 0.04 2.38
(B6.5XFAD x BXD14)F1-ADtg m 0.018 0.00447214   5 0.002 0.2485 0.01, 0.02 -0.34
(B6.5XFAD x BXD152)F1 f 0.01714 0.00755929   7 0.00285714 0.441 0.01, 0.03 -0.24
(B6.5XFAD x BXD152)F1 m 0.03 0.0   1   0.0 0.0 0.03, 0.03 1.05
(B6.5XFAD x BXD154)F1 f 0.02667 0.01366   6 0.00557773 0.5123 0.01, 0.04 1.89
(B6.5XFAD x BXD154)F1 m 0.04 0.0   1   0.0 0.0 0.04, 0.04 2.21
(B6.5XFAD x BXD161)F1 f 0.018 0.01304   5 0.00583095 0.7244 0.01, 0.04 -0.04
(B6.5XFAD x BXD161)F1 m 0.03 0.0   1   0.0 0.0 0.03, 0.03 1.05
(B6.5XFAD x BXD169)F1 f 0.03 0.00707107   5 0.00316228 0.2357 0.02, 0.04 2.63
(B6.5XFAD x BXD169)F1 m 0.01 0.0   2   0.0 0.0 0.01, 0.01 -1.27
(B6.5XFAD x BXD16)F1-ADtg f 0.02333 0.01155   3 0.00666667 0.4949 0.01, 0.03 1.14
(B6.5XFAD x BXD16)F1-ADtg m 0.03 0.02828   2   0.02 0.9428 0.01, 0.05 1.05
(B6.5XFAD x BXD172)F1 f 0.01818 0.00603023   11 0.00181818 0.3317 0.01, 0.03 0.0
(B6.5XFAD x BXD172)F1 m 0.03 0.0   1   0.0 0.0 0.03, 0.03 1.05
(B6.5XFAD x BXD197)F1 f 0.02 0.0   2   0.0 0.0 0.02, 0.02 0.4
(B6.5XFAD x BXD197)F1 m 0.015 0.01   4 0.005 0.6667 -0.69
(B6.5XFAD x BXD19)F1 f 0.01667 0.00707107   9 0.00235702 0.4243 0.01, 0.03 -0.34
(B6.5XFAD x BXD19)F1 m 0.01 0.0   1   0.0 0.0 0.01, 0.01 -1.27
(B6.5XFAD x BXD216)F1 m 0.02 0.00816497   4 0.00408248 0.4082 0.01, 0.03 -0.11
(B6.5XFAD x BXD22)F1-ADtg f 0.01545 0.008202   11 0.00247299 0.5307 -0.61
(B6.5XFAD x BXD28)F1 f 0.01462 0.00660225   13 0.00183114 0.4517 0.01, 0.03 -0.8
(B6.5XFAD x BXD28)F1 m 0.015 0.0057735   4 0.00288675 0.3849 0.01, 0.02 -0.69
(B6.5XFAD x BXD31)F1 f 0.01571 0.00534522   7 0.00202031 0.3402 0.01, 0.02 -0.56
(B6.5XFAD x BXD32)F1-ADtg f 0.016 0.00547723   5 0.00244949 0.3423 0.01, 0.02 -0.49
(B6.5XFAD x BXD33)F1 f 0.01333 0.00492366   12 0.00142134 0.3693 0.01, 0.02 -1.09
(B6.5XFAD x BXD34)F1-ADtg f 0.01846 0.00688737   13 0.00191021 0.3731 0.01, 0.03 0.06
(B6.5XFAD x BXD38)F1 f 0.016 0.00894427   5 0.004 0.559 0.01, 0.03 -0.49
(B6.5XFAD x BXD38)F1 m 0.01333 0.0057735   3 0.00333333 0.433 0.01, 0.02 -0.88
(B6.5XFAD x BXD39)F1 f 0.01091 0.00831209   11 0.00250619 0.7619 -1.63
(B6.5XFAD x BXD42)F1-ADtg f 0.02 0.0   4 0.0 0.0 0.02, 0.02 0.4
(B6.5XFAD x BXD44)F1-ADtg f 0.02 0.0   1   0.0 0.0 0.02, 0.02 0.4
(B6.5XFAD x BXD44)F1-ADtg m 0.025 0.00707107   2   0.005 0.2828 0.02, 0.03 0.47
(B6.5XFAD x BXD48a)F1 f 0.02167 0.00983192   6 0.00401386 0.4538 0.01, 0.03 0.77
(B6.5XFAD x BXD49)F1 f 0.012 0.00447214   5 0.002 0.3727 0.01, 0.02 -1.38
(B6.5XFAD x BXD50)F1 f 0.01429 0.00646206   14 0.00172706 0.4523 0.01, 0.03 -0.87
(B6.5XFAD x BXD51)F1-ADtg f 0.015 0.00707107   2   0.005 0.4714 0.01, 0.02 -0.71
(B6.5XFAD x BXD53)F1 f 0.01429 0.00534522   7 0.00202031 0.3742 0.01, 0.02 -0.87
(B6.5XFAD x BXD55)F1-ADtg m 0.015 0.00707107   2   0.005 0.4714 0.01, 0.02 -0.69
(B6.5XFAD x BXD61)F1-ADtg f 0.02286 0.00755929   7 0.00285714 0.3307 0.01, 0.03 1.04
(B6.5XFAD x BXD61)F1-ADtg m 0.0175 0.00707107   8 0.0025 0.4041 0.01, 0.03 -0.4
(B6.5XFAD x BXD62)F1-ADtg f 0.01333 0.00816497   6 0.00333333 0.6124 0.01, 0.03 -1.09
(B6.5XFAD x BXD62)F1-ADtg m 0.015 0.00707107   2   0.005 0.4714 0.01, 0.02 -0.69
(B6.5XFAD x BXD64)F1 f 0.01636 0.0080904   11 0.00243935 0.4944 0.01, 0.03 -0.41
(B6.5XFAD x BXD65a)F1 f 0.019 0.00552506   20 0.00123544 0.2908 0.01, 0.03 0.18
(B6.5XFAD x BXD65)F1-ADtg f 0.02 0.00534522   8 0.00188982 0.2673 0.01, 0.03 0.4
(B6.5XFAD x BXD66)F1-ADtg f 0.02167 0.00752773   6 0.00307318 0.3474 0.01, 0.03 0.77
(B6.5XFAD x BXD66)F1-ADtg m 0.01 0.0   2   0.0 0.0 0.01, 0.01 -1.27
(B6.5XFAD x BXD68)F1-ADtg f 0.01917 0.00792961   12 0.00228908 0.4137 0.22
(B6.5XFAD x BXD68)F1-ADtg m 0.028 0.01095   5 0.00489898 0.3912 0.01, 0.04 0.82
(B6.5XFAD x BXD69)F1-ADtg m 0.03 0.0   1   0.0 0.0 0.03, 0.03 1.05
(B6.5XFAD x BXD70)F1-ADtg f 0.02 0.00632456   6 0.00258199 0.3162 0.01, 0.03 0.4
(B6.5XFAD x BXD73)F1 f 0.012 0.00632456   10 0.002 0.527 -1.38
(B6.5XFAD x BXD73)F1 m 0.00714286 0.0048795   7 0.00184428 0.6831 -1.6
(B6.5XFAD x BXD74)F1 f 0.02111 0.00927961   9 0.0030932 0.4396 0.01, 0.04 0.65
(B6.5XFAD x BXD74)F1 m 0.025 0.00707107   2   0.005 0.2828 0.02, 0.03 0.47
(B6.5XFAD x BXD75)F1-ADtg f 0.01545 0.00687552   11 0.00207305 0.4449 0.01, 0.03 -0.61
(B6.5XFAD x BXD75)F1-ADtg m 0.015 0.0057735   4 0.00288675 0.3849 0.01, 0.02 -0.69
(B6.5XFAD x BXD77)F1-ADtg f 0.02143 0.00690066   7 0.0026082 0.322 0.01, 0.03 0.72
(B6.5XFAD x BXD77)F1-ADtg m 0.018 0.00447214   5 0.002 0.2485 0.01, 0.02 -0.34
(B6.5XFAD x BXD78)F1 f 0.02 0.00632456   6 0.00258199 0.3162 0.01, 0.03 0.4
(B6.5XFAD x BXD78)F1 m 0.02 0.0   2   0.0 0.0 0.02, 0.02 -0.11
(B6.5XFAD x BXD83)F1 f 0.01727 0.00786245   11 0.00237062 0.4552 0.01, 0.03 -0.21
(B6.5XFAD x BXD83)F1 m 0.02 0.0   1   0.0 0.0 0.02, 0.02 -0.11
(B6.5XFAD x BXD87)F1-ADtg f 0.01111 0.00333333   9 0.00111111 0.3 0.01, 0.02 -1.58
(B6.5XFAD x BXD89)F1-ADtg f 0.024 0.00894427   5 0.004 0.3727 0.01, 0.03 1.29
(B6.5XFAD x BXD99)F1-ADtg f 0.02312 0.00704154   16 0.00176039 0.3045 0.01, 0.04 1.1
(B6.5XFAD x BXD99)F1-ADtg m 0.03 0.01   3 0.0057735 0.3333 0.02, 0.04 1.05
(B6.5XFAD x D2)F1-ADtg m 0.025 0.00707107   2   0.005 0.2828 0.02, 0.03 0.47
(B6 x DBA/2J-Gpnmb+/SjJ)F1 f 0.01895 0.00809303   19 0.00185667 0.4271 0.01, 0.03 0.17
(B6 x DBA/2J-Gpnmb+/SjJ)F1 m 0.01364 0.00657952   22 0.00140276 0.4825 -0.85
C57BL/6J f 0.018 0.00788811   10 0.00249444 0.4382 0.01, 0.03 -0.04
C57BL/6J m 0.01412 0.00795206   17 0.00192866 0.5633 -0.79


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 0.0228571429 0.0028509655 0.0284759834 0.0172383023
129S1/SvImJ 2 0.0175 0.002666834 0.0227559441 0.0122440559
A/J 1 0.0133333333 0.0030793946 0.0194023748 0.0072642919
A/J 2 0.015 0.005333668 0.0255118882 0.0044881118
AKR/J 1 0.012 0.0023852888 0.0167010593 0.0072989407
AKR/J 2 0.0071428571 0.0028509655 0.0127616977 0.0015240166
BALB/cJ 1 0.0216666667 0.0030793946 0.0277357081 0.0155976252
BALB/cJ 2 0.01 0.005333668 0.0205118882 -0.0005118882
BTBR T+ Itpr3tf/J 1 0.0288888889 0.0025143152 0.0338442405 0.0239335373
BTBR T+ Itpr3tf/J 2 0.018 0.0033733078 0.0246483018 0.0113516982
C3H/HeJ 1 0.0191666667 0.0021774608 0.023458127 0.0148752063
C3H/HeJ 2 0.028 0.0033733078 0.0346483018 0.0213516982
C57BL/6J 1 0.0154545455 0.0022742837 0.0199368296 0.0109722613
C57BL/6J 2 0.015 0.0037714728 0.0224330274 0.0075669726
CAST/EiJ 1 0.0233333333 0.0043549217 0.0319162541 0.0147504126
CAST/EiJ 2 0.03 0.005333668 0.0405118882 0.0194881118
CBA/J 1 0.0211111111 0.0025143152 0.0260664627 0.0161557595
CBA/J 2 0.025 0.005333668 0.0355118882 0.0144881118
DBA/2J 1 0.0214285714 0.0028509655 0.027047412 0.0158097309
DBA/2J 2 0.018 0.0033733078 0.0246483018 0.0113516982
FVB/NJ 1 0.023125 0.0018857364 0.0268415137 0.0194084863
FVB/NJ 2 0.03 0.0043549217 0.0385829207 0.0214170793
KK/HlJ 1 0.018 0.0023852888 0.0227010593 0.0132989407
KK/HlJ 2 0.0141176471 0.001829433 0.017723195 0.0105120992
LP/J 1 0.0189473684 0.0017304704 0.0223578753 0.0155368615
LP/J 2 0.0136363636 0.0016081614 0.0168058172 0.0104669101
NOD/ShiLtJ 1 0.0146153846 0.0020920367 0.0187384864 0.0104922829
NOD/ShiLtJ 2 0.015 0.0037714728 0.0224330274 0.0075669726
NZB/BlNJ 1 0.03 0.0033733078 0.0366483018 0.0233516982
NZB/BlNJ 2 0.01 0.005333668 0.0205118882 -0.0005118882
PL/J 1 0.016 0.0033733078 0.0226483018 0.0093516982
PL/J 2 0.0133333333 0.0043549217 0.0219162541 0.0047504126
SJL/J 1 0.02 0.0030793946 0.0260690415 0.0139309585
SJL/J 2 0.02 0.005333668 0.0305118882 0.0094881118
SWR/J 1 0.02 0.005333668 0.0305118882 0.0094881118
SWR/J 2 0.015 0.0037714728 0.0224330274 0.0075669726


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 0.0201785714 0.0019519226 0.0240255286 0.0163316143
A/J both 0.0141666667 0.0030793946 0.0202357081 0.0080976252
AKR/J both 0.0095714286 0.0018586021 0.0132344645 0.0059083927
BALB/cJ both 0.0158333333 0.0030793946 0.0219023748 0.0097642919
BTBR T+ Itpr3tf/J both 0.0234444444 0.002103627 0.027590389 0.0192984998
C3H/HeJ both 0.0235833333 0.0020075197 0.0275398643 0.0196268024
C57BL/6J both 0.0152272727 0.0022020657 0.0195672257 0.0108873197
CAST/EiJ both 0.0266666667 0.0034428679 0.0334520613 0.019881272
CBA/J both 0.0230555556 0.0029482959 0.0288662204 0.0172448907
DBA/2J both 0.0197142857 0.0022083483 0.0240666209 0.0153619505
FVB/NJ both 0.0265625 0.0023728329 0.0312390105 0.0218859895
KK/HlJ both 0.0160588235 0.0015030326 0.0190210834 0.0130965637
LP/J both 0.016291866 0.0011811764 0.0186197939 0.0139639381
NOD/ShiLtJ both 0.0148076923 0.0021564221 0.0190576883 0.0105576963
NZB/BlNJ both 0.02 0.0031554405 0.0262189169 0.0137810831
PL/J both 0.0146666667 0.0027542943 0.0200949824 0.009238351
SJL/J both 0.02 0.0030793946 0.0260690415 0.0139309585
SWR/J both 0.0175 0.0032661913 0.0239371906 0.0110628094




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA