Project measure / variable:   Project1194   lightdark_latency__whole_body__light__pct_total

ID, description, units MPD:129875   lightdark_latency__whole_body__light__pct_total   lightdark_latency__whole_body__light__pct_total    
Data set, strains Project1194   other   10 strains     sex: both
Procedure None
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  STRAIN COMPARISON PLOT
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Project1194 - lightdark_latency__whole_body__light__pct_total



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means40.238   None 46.164   None
Median of the strain means40.0   None 50.48   None
SD of the strain means± 28.671 ± 23.84
Coefficient of variation (CV)0.7126 0.5164
Min–max range of strain means0.0   –   85.71   None 0.0   –   80.0   None
Mean sample size per strain10.7   mice 10.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 822.9384 822.9384 0.355 0.552
strain 9 50811.2643 5645.696 2.4352 0.0121
sex:strain 9 30626.7712 3402.9746 1.4678 0.1622
Residuals 194 449766.9971 2318.3866


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C57BL/6J f 61.9 49.761   21 10.859 0.8038 0.76
C57BL/6J m 54.53 50.95   22 10.863 0.9344 0.35
GAIA/NachJ f 40.0 51.64   10 16.33 1.291 -0.01
GAIA/NachJ m 59.99 50.7   15 13.091 0.8452 0.58
GAIC/NachJ f 0.0 0.0   3 0.0 None -1.4
GAIC/NachJ m 0.0 0.0   2   0.0 None -1.94
MANB/NachJ f 63.64 50.45   11 15.212 0.7928 0.82
MANB/NachJ m 70.0 48.305   10 15.275 0.6901 1.0
MANE/NachJ f 60.0 54.77   5 24.495 0.9129 0.69
MANE/NachJ m 60.0 54.77   5 24.495 0.9129 0.58
MANF/NachJ f 40.0 50.26   20 11.239 1.2566 -0.01
MANF/NachJ m 33.333 49.237   12 14.213 1.4771 -0.54
SARA/NachJ f 0.0 0.0   4 0.0 None -1.4
SARA/NachJ m 80.0 42.164   10 13.333 0.527 1.42
SARB/NachJ f 85.71 37.796   7 14.286 0.441 1.59
SARB/NachJ m 46.429 51.38   11 15.493 1.1067 0.01
SARC/NachJ f 36.842 49.559   19 11.37 1.3452 -0.12
SARC/NachJ m 24.095 43.462   17 10.541 1.8037 -0.93
TUCB/NachJ f 14.286 37.796   7 14.286 2.6458 -0.91
TUCB/NachJ m 33.26 57.61   3 33.26 1.7321 -0.54


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 63.6363636364 14.517658787 92.269070711 35.0036565617
129S1/SvImJ 2 70.0 15.2262489905 100.030236527 39.969763473
A/J 1 60.0 21.5331678264 102.4691677777 17.5308322223
A/J 2 60.0 21.5331678264 102.4691677777 17.5308322223
BALB/cJ 1 40.0 10.7665839132 61.2345838888 18.7654161112
BALB/cJ 2 33.3333333333 13.8996000638 60.747063255 5.9196034116
BTBR T+ Itpr3tf/J 1 40.0 15.2262489905 70.030236527 9.969763473
BTBR T+ Itpr3tf/J 2 59.9893333333 12.4321802411 84.508918782 35.4697478846
C3H/HeJ 1 0.0 24.0748135154 47.4819730494 -47.4819730494
C3H/HeJ 2 80.0 15.2262489905 110.030236527 49.969763473
C57BL/6J 1 14.2857142857 18.1988484063 50.1787121278 -21.6072835564
C57BL/6J 2 33.26 27.7992001276 88.0874598434 -21.5674598434
CAST/EiJ 1 0.0 27.7992001276 54.8274598434 -54.8274598434
CAST/EiJ 2 0.0 34.0469277851 67.1496502547 -67.1496502547
DBA/2J 1 85.7142857143 18.1988484063 121.6072835564 49.8212878722
DBA/2J 2 46.4285454545 14.517658787 75.0612525292 17.7958383799
FVB/NJ 1 36.8421052632 11.0462820209 58.6283286487 15.0558818777
FVB/NJ 2 24.0952470588 11.6779998872 47.1273870818 1.0631070358
LP/J 1 61.9047619048 10.5071100263 82.6275938709 41.1819299386
LP/J 2 54.5318181818 10.2655349752 74.778199518 34.2854368456


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 66.8181818182 10.5190431477 87.5645490923 46.0718145441
A/J both 60.0 15.2262489905 90.030236527 29.969763473
BALB/cJ both 36.6666666667 8.7908789534 54.0046318093 19.328701524
BTBR T+ Itpr3tf/J both 49.9946666667 9.8285014609 69.3791009919 30.6102323414
C3H/HeJ both 40.0 14.242851752 68.0907140819 11.9092859181
C57BL/6J both 23.7728571429 16.6131996546 56.5385314339 -8.9928171481
CAST/EiJ both 0.0 21.9771973835 43.3449128567 -43.3449128567
DBA/2J both 66.0714155844 11.6400225512 89.0286541407 43.1141770282
FVB/NJ both 30.468676161 8.0373507428 46.3204820789 14.616870243
LP/J both 58.2182900433 7.3447356901 72.7040737804 43.7325063062




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA