Project measure / variable:   Project1194   lightdark_duration__whole_body__light__s

ID, description, units MPD:129013   lightdark_duration__whole_body__light__s   lightdark_duration__whole_body__light__s    
Data set, strains Project1194   other   10 strains     sex: both
Procedure None
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  STRAIN COMPARISON PLOT
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Project1194 - lightdark_duration__whole_body__light__s



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means134.6   None 133.0   None
Median of the strain means135.1   None 139.2   None
SD of the strain means± 18.392 ± 20.038
Coefficient of variation (CV)0.1366 0.1506
Min–max range of strain means98.61   –   157.6   None 82.46   –   151.7   None
Mean sample size per strain10.7   mice 10.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 190.4181 190.4181 0.1736 0.6774
strain 9 29365.5217 3262.8357 2.9742 0.0024
sex:strain 9 10095.8089 1121.7565 1.0225 0.4234
Residuals 194 212829.9541 1097.0616


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
C57BL/6J f 129.0 27.671   21 6.0384 0.2146 71.64, 173.4 -0.31
C57BL/6J m 143.3 39.825   22 8.4906 0.2779 69.28, 201.1 0.51
GAIA/NachJ f 157.6 24.427   10 7.7244 0.155 120.1, 184.7 1.25
GAIA/NachJ m 143.6 12.426   15 3.2084 0.0865 119.1, 161.8 0.53
GAIC/NachJ f 113.5 37.123   3 21.433 0.3272 77.81, 151.9 -1.15
GAIC/NachJ m 123.8 15.839   2   11.2 0.1279 112.6, 135.0 -0.46
MANB/NachJ f 139.7 31.021   11 9.3531 0.222 79.53, 187.7 0.28
MANB/NachJ m 136.9 28.58   10 9.0377 0.2087 74.08, 172.1 0.19
MANE/NachJ f 152.4 12.434   5 5.5604 0.0816 133.2, 163.6 0.97
MANE/NachJ m 148.4 23.032   5 10.3 0.1552 124.2, 178.3 0.77
MANF/NachJ f 149.0 17.744   20 3.9677 0.1191 115.4, 188.2 0.78
MANF/NachJ m 124.0 22.469   12 6.4861 0.1812 93.33, 159.3 -0.45
SARA/NachJ f 129.1 21.312   4 10.656 0.1651 112.5, 159.8 -0.3
SARA/NachJ m 134.6 34.586   10 10.937 0.257 65.17, 170.6 0.08
SARB/NachJ f 146.7 31.715   7 11.987 0.2162 97.69, 198.0 0.66
SARB/NachJ m 151.7 11.64   11 3.5097 0.0767 139.0, 179.4 0.93
SARC/NachJ f 130.5 55.41   19 12.712 0.4246 6.585, 184.6 -0.22
SARC/NachJ m 141.4 48.132   17 11.674 0.3405 16.95, 184.2 0.42
TUCB/NachJ f 98.61 32.368   7 12.234 0.3282 47.455, 139.1 -1.96
TUCB/NachJ m 82.46 46.298   3 26.73 0.5615 29.18, 112.9 -2.52


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ 1 139.73 9.9866347912 159.4263155585 120.0336844415
129S1/SvImJ 2 136.938 10.4740709325 157.5956700341 116.2803299659
A/J 1 152.38 14.812573166 181.5943571293 123.1656428707
A/J 2 148.36 14.812573166 177.5743571293 119.1456428707
BALB/cJ 1 149.025 7.406286583 163.6321785647 134.4178214353
BALB/cJ 2 123.97 9.5614748644 142.8277864387 105.1122135613
BTBR T+ Itpr3tf/J 1 157.63 10.4740709325 178.2876700341 136.9723299659
BTBR T+ Itpr3tf/J 2 143.6133333333 8.5520431048 160.4802502861 126.7464163805
C3H/HeJ 1 129.1 16.5609602604 161.76264423 96.43735577
C3H/HeJ 2 134.589 10.4740709325 155.2466700341 113.9313299659
C57BL/6J 1 98.6121428571 12.5189092347 123.3027810841 73.9215046302
C57BL/6J 2 82.46 19.1229497288 120.1755728773 44.7444271227
CAST/EiJ 1 113.47 19.1229497288 151.1855728773 75.7544271227
CAST/EiJ 2 123.8 23.4207346062 169.9919544531 77.6080455469
DBA/2J 1 146.6842857143 12.5189092347 171.3749239413 121.9936474873
DBA/2J 2 151.7454545455 9.9866347912 171.441770104 132.0491389869
FVB/NJ 1 130.5047368421 7.5986897035 145.4913858345 115.5180878497
FVB/NJ 2 141.3594117647 8.0332456959 157.2031214321 125.5157020974
LP/J 1 128.9542857143 7.2277956166 143.2094323411 114.6991390875
LP/J 2 143.3140909091 7.0616171821 157.2414892049 129.3866926133


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 138.334 7.2360043593 152.6053364635 124.0626635365
A/J both 150.37 10.4740709325 171.0276700341 129.7123299659
BALB/cJ both 136.4975 6.0472076724 148.424211355 124.570788645
BTBR T+ Itpr3tf/J both 150.6216666667 6.7609837148 163.9561353356 137.2871979977
C3H/HeJ both 131.8445 9.7975962185 151.1679809192 112.5210190808
C57BL/6J both 90.5360714286 11.4281483054 113.0754372888 67.9967055684
CAST/EiJ both 118.635 15.118019181 148.4517783876 88.8182216124
DBA/2J both 149.2148701299 8.0071212505 165.0070554017 133.4226848581
FVB/NJ both 135.9320743034 5.5288588701 146.8364631451 125.0276854617
LP/J both 136.1341883117 5.0524119661 146.0988963937 126.1694802296




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA