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Project measure / variable:   CSNA03   amplitude_do

ID, description, units MPD:112551   amplitude_do   peak-to-trough, indicating level of synchronization in circadian rhythm (max counts/s), in fibroblast cultures, DO   [n/s]  
Data set, strains CSNA03   DO population w/par   9 strains     sex: both     age: 8-12wks
Procedure in vitro assay
Ontology mappings

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Plot Options Bins number: (min: 10, max: 40)


Distribution of Individual Animals with Boxplots.





  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means274.0   n/s 333.3   n/s
Median of the strain means242.1   n/s 290.2   n/s
SD of the strain means± 168.2 ± 211.8
Coefficient of variation (CV)0.6137 0.6355
Min–max range of strain means91.91   –   590.6   n/s 70.39   –   718.7   n/s
Mean sample size per strain28.8   mice 23.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 67336.3647 67336.3647 2.3329 0.1274
strain 8 8748551.8584 1093568.9823 37.8864 < 0.0001
sex:strain 8 674325.4945 84290.6868 2.9202 0.0035
Residuals 451 13017845.966 28864.4035


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 316.3 212.7   10 67.27 0.6726 83.93, 623.5 0.25
129S1/SvImJ m 502.2 589.2   9 196.4 1.1733 39.663, 1763.0 0.8
A/J f 97.18 30.173   9 10.058 0.3105 34.489, 140.4 -1.05
A/J m 290.2 207.9   10 65.73 0.7162 34.489, 563.3 -0.2
C57BL/6J f 237.7 109.5   10 34.612 0.4604 102.0, 371.7 -0.22
C57BL/6J m 201.5 157.2   10 49.724 0.7803 6.914, 469.3 -0.62
CAST/EiJ f 413.4 324.0   10 102.5 0.7837 28.163, 1107.0 0.83
CAST/EiJ m 444.8 297.0   10 93.93 0.6677 47.289, 872.8 0.53
J:DO f 105.2 99.05   184 7.3017 0.9415 0.14625, 623.0 -1.0
J:DO m 96.5 100.3   136 8.5993 1.0392 0.58067, 578.9 -1.12
NOD/ShiLtJ f 91.91 14.714   9 4.9047 0.1601 70.89, 116.2 -1.08
NOD/ShiLtJ m 70.39 22.02   10 6.9632 0.3128 20.223, 101.2 -1.24
NZO/HlLtJ f 242.1 129.4   8 45.751 0.5345 49.372, 443.2 -0.19
NZO/HlLtJ m 449.6 308.4   7 116.6 0.686 50.16, 824.7 0.55
PWK/PhJ f 371.5 202.6   10 64.06 0.5453 30.887, 649.6 0.58
PWK/PhJ m 226.1 132.9   10 42.015 0.5877 16.119, 365.0 -0.51
WSB/EiJ f 590.6 478.1   9 159.4 0.8095 117.7, 1331.0 1.88
WSB/EiJ m 718.7 407.8   8 144.2 0.5674 116.8, 1140.0 1.82


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 316.273 53.725602344 421.8565906717 210.6894093283
129S1/SvImJ m 502.2292222222 56.6317573572 613.5240989094 390.9343455351
A/J f 97.1821111111 56.6317573572 208.4769877983 -14.112765576
A/J m 290.2229 53.725602344 395.8064906717 184.6393093283
C57BL/6J f 237.73 53.725602344 343.3135906717 132.1464093283
C57BL/6J m 201.5108 53.725602344 307.0943906717 95.9272093283
CAST/EiJ f 413.4083 53.725602344 518.9918906717 307.8247093283
CAST/EiJ m 444.8329 53.725602344 550.4164906717 339.2493093283
J:DO f 105.2040986413 12.5248456279 129.8184001345 80.5897971481
J:DO m 96.5044005147 14.5683993913 125.1347713429 67.8740296865
NOD/ShiLtJ f 91.9066666667 56.6317573572 203.2015433538 -19.3882100205
NOD/ShiLtJ m 70.3883 53.725602344 175.9718906717 -35.1952906717
NZO/HlLtJ f 242.109 60.0670494867 360.1550430252 124.0629569748
NZO/HlLtJ m 449.6371428571 64.2143769753 575.8336711042 323.4406146101
PWK/PhJ f 371.5121 53.725602344 477.0956906717 265.9285093283
PWK/PhJ m 226.0738 53.725602344 331.6573906717 120.4902093283
WSB/EiJ f 590.6222222222 56.6317573572 701.9170989094 479.3273455351
WSB/EiJ m 718.6875 60.0670494867 836.7335430252 600.6414569748


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 409.2511111111 39.0307452164 485.9558114168 332.5464108054
A/J both 193.7025055556 39.0307452164 270.4072058612 116.9978052499
C57BL/6J both 219.6204 37.9897377408 294.279272946 144.961527054
CAST/EiJ both 429.1206 37.9897377408 503.779472946 354.461727054
J:DO both 100.854249578 9.6061180873 119.7325570482 81.9759421078
NOD/ShiLtJ both 81.1474833333 39.0307452164 157.852183639 4.4427830277
NZO/HlLtJ both 345.8730714286 43.9645784819 432.2739279283 259.4722149289
PWK/PhJ both 298.79295 37.9897377408 373.451822946 224.134077054
WSB/EiJ both 654.6548611111 41.2771316088 735.7742451243 573.5354770979




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA