Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region Y:153548-2383885

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700020D14Rik Y 206150 to 207789 1639 + lncRNA gene RIKEN cDNA 1700020D14 gene
Gm29277 Y 206151 to 207788 1637 + lincRNA gene predicted gene 29277
Tssr5737 Y 206179 to 206199 20 + TSS region transcription start site region 5737
Gm29089 Y 321659 to 323295 1636 - lincRNA gene predicted gene 29089
Gm2098 Y 670179 to 695777 25598 - pseudogene predicted gene 2098
Zfy1 Y 725207 to 797409 72202 - protein coding gene zinc finger protein 1, Y-linked
Tssr164651 Y 818583 to 818633 50 + TSS region transcription start site region 164651
Tssr164652 Y 818646 to 818656 10 + TSS region transcription start site region 164652
Uba1y Y 818649 to 844224 25575 + protein coding gene ubiquitin-activating enzyme, Chr Y
Gm28588 Y 841783 to 847750 5967 - antisense lncRNA gene predicted gene 28588
Tssr5738 Y 847748 to 847750 2 - TSS region transcription start site region 5738
Gm28587 Y 869709 to 873309 3600 - lincRNA gene predicted gene 28587
Rhoay-ps3 Y 873640 to 874215 575 + pseudogene ras homolog A translocated to the Y, pseudogene 3
Kdm5d Y 897639 to 943813 46174 + protein coding gene lysine (K)-specific demethylase 5D
Tssr164653 Y 897782 to 897800 18 + TSS region transcription start site region 164653
Tssr5739 Y 903848 to 903855 7 + TSS region transcription start site region 5739
DYDcr1 Y 904889 to 904984 95 DNA segment DNA Segment, Chr Y, Derry C. Roopenian 1
DYDcr2 Y 934929 to 935063 134 DNA segment DNA Segment, Chr Y, Derry C. Roopenian 2
Tssr164654 Y 943007 to 943021 14 + TSS region transcription start site region 164654
n-R5s1 Y 991630 to 991748 118 - rRNA gene nuclear encoded rRNA 5S 1
Gm47281 Y 991657 to 991716 59 - miRNA gene predicted gene, 47281
Eif2s3y Y 1010543 to 1028847 18304 + protein coding gene eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked
Tssr164655 Y 1010587 to 1010613 26 + TSS region transcription start site region 164655
DYBish6 Y 1025218 to 1025340 122 DNA segment DNA segment, Chr Y, Bishop 6
Gm29650 Y 1048393 to 1049134 741 + lincRNA gene predicted gene 29650
Tspy-ps Y 1055764 to 1058868 3104 - pseudogene testis specific protein-Y encoded, pseudogene
Uty Y 1096861 to 1245759 148898 - protein coding gene ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome
Gm39552 Y 1114067 to 1120066 5999 - lncRNA gene predicted gene, 39552
Tssr164660 Y 1137178 to 1137181 3 - TSS region transcription start site region 164660
Tssr164661 Y 1197438 to 1197452 14 - TSS region transcription start site region 164661
Tssr164662 Y 1245655 to 1245676 21 - TSS region transcription start site region 164662
Tssr164663 Y 1245685 to 1245752 67 - TSS region transcription start site region 164663
Tssr164664 Y 1245753 to 1245766 13 - TSS region transcription start site region 164664
Ddx3y Y 1260771 to 1286629 25858 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
Gm4017 Y 1268548 to 1268885 337 - pseudogene predicted gene 4017
Tssr164665 Y 1270621 to 1270625 4 - TSS region transcription start site region 164665
Gm18665 Y 1277313 to 1277582 269 - pseudogene predicted gene, 18665
Cpgi23077 Y 1286393 to 1286737 344 CpG island CpG island 23077
Tssr164666 Y 1286429 to 1286437 8 - TSS region transcription start site region 164666
Tssr5740 Y 1286496 to 1286501 5 - TSS region transcription start site region 5740
Tssr164667 Y 1286517 to 1286548 31 - TSS region transcription start site region 164667
Tssr164668 Y 1286563 to 1286615 52 - TSS region transcription start site region 164668
Tssr164669 Y 1286623 to 1286635 12 - TSS region transcription start site region 164669
Gm5377 Y 1291007 to 1294821 3814 + pseudogene predicted gene 5377
Usp9y Y 1298961 to 1459782 160821 - protein coding gene ubiquitin specific peptidase 9, Y chromosome
Gm25565 Y 1308273 to 1308377 104 - snRNA gene predicted gene, 25565
Tssr164670 Y 1459771 to 1459782 11 - TSS region transcription start site region 164670
Gm17790 Y 1736187 to 1737414 1227 + pseudogene predicted gene, 17790
Gm29167 Y 1788576 to 1789167 591 + pseudogene predicted gene 29167
Gm8446 Y 1948666 to 1963496 14830 + pseudogene predicted gene 8446
Gm28534 Y 2004144 to 2004819 675 + pseudogene predicted gene 28534
Vmn2r-ps136 Y 2016609 to 2017102 493 - pseudogene vomeronasal 2, receptor, pseudogene 136
Tssr164656 Y 2053270 to 2053273 3 + TSS region transcription start site region 164656
Gm28975 Y 2061234 to 2061919 685 - pseudogene predicted gene 28975
Gm28974 Y 2076580 to 2076810 230 + pseudogene predicted gene 28974
Gm18797 Y 2080856 to 2085281 4425 + pseudogene predicted gene, 18797
Rhoay-ps1 Y 2095392 to 2095972 580 + pseudogene ras homolog A translocated to the Y, pseudogene 1
Zfy2 Y 2106175 to 2170409 64234 - protein coding gene zinc finger protein 2, Y-linked
Tssr164671 Y 2170393 to 2170396 3 - TSS region transcription start site region 164671
Tssr164657 Y 2174798 to 2174799 1 + TSS region transcription start site region 164657
Uba1y-ps2 Y 2264257 to 2278687 14430 + pseudogene ubiquitin-activating enzyme, Chr Y, pseudogene 2
Gm18796 Y 2296764 to 2306870 10106 - pseudogene predicted gene, 18796
Gm29552 Y 2325791 to 2326450 659 + pseudogene predicted gene 29552
Gm29550 Y 2328880 to 2329287 407 + pseudogene predicted gene 29550
Gm29551 Y 2336696 to 2337393 697 - pseudogene predicted gene 29551
Gm39555 Y 2346569 to 2348631 2062 + lncRNA gene predicted gene, 39555
Gm8480 Y 2380664 to 2381361 697 - pseudogene predicted gene 8480