Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region Y:1276175-3000409

Filter by:
60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ddx3y Y 1260771 to 1286629 25858 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
Gm18665 Y 1277313 to 1277582 269 - pseudogene predicted gene, 18665
Cpgi23077 Y 1286393 to 1286737 344 CpG island CpG island 23077
Tssr164666 Y 1286429 to 1286437 8 - TSS region transcription start site region 164666
Tssr5740 Y 1286496 to 1286501 5 - TSS region transcription start site region 5740
Tssr164667 Y 1286517 to 1286548 31 - TSS region transcription start site region 164667
Tssr164668 Y 1286563 to 1286615 52 - TSS region transcription start site region 164668
Tssr164669 Y 1286623 to 1286635 12 - TSS region transcription start site region 164669
Gm5377 Y 1291007 to 1294821 3814 + pseudogene predicted gene 5377
Usp9y Y 1298961 to 1459782 160821 - protein coding gene ubiquitin specific peptidase 9, Y chromosome
Gm25565 Y 1308273 to 1308377 104 - snRNA gene predicted gene, 25565
Tssr164670 Y 1459771 to 1459782 11 - TSS region transcription start site region 164670
Gm17790 Y 1736187 to 1737414 1227 + pseudogene predicted gene, 17790
Gm29167 Y 1788576 to 1789167 591 + pseudogene predicted gene 29167
Gm8446 Y 1948666 to 1963496 14830 + pseudogene predicted gene 8446
Gm28534 Y 2004144 to 2004819 675 + pseudogene predicted gene 28534
Vmn2r-ps136 Y 2016609 to 2017102 493 - pseudogene vomeronasal 2, receptor, pseudogene 136
Tssr164656 Y 2053270 to 2053273 3 + TSS region transcription start site region 164656
Gm28975 Y 2061234 to 2061919 685 - pseudogene predicted gene 28975
Gm28974 Y 2076580 to 2076810 230 + pseudogene predicted gene 28974
Gm18797 Y 2080856 to 2085281 4425 + pseudogene predicted gene, 18797
Rhoay-ps1 Y 2095392 to 2095972 580 + pseudogene ras homolog A translocated to the Y, pseudogene 1
Zfy2 Y 2106175 to 2170409 64234 - protein coding gene zinc finger protein 2, Y-linked
Tssr164671 Y 2170393 to 2170396 3 - TSS region transcription start site region 164671
Tssr164657 Y 2174798 to 2174799 1 + TSS region transcription start site region 164657
Uba1y-ps2 Y 2264257 to 2278687 14430 + pseudogene ubiquitin-activating enzyme, Chr Y, pseudogene 2
Gm18796 Y 2296764 to 2306870 10106 - pseudogene predicted gene, 18796
Gm29552 Y 2325791 to 2326450 659 + pseudogene predicted gene 29552
Gm29550 Y 2328880 to 2329287 407 + pseudogene predicted gene 29550
Gm29551 Y 2336696 to 2337393 697 - pseudogene predicted gene 29551
Gm39555 Y 2346569 to 2348631 2062 + lncRNA gene predicted gene, 39555
Gm8480 Y 2380664 to 2381361 697 - pseudogene predicted gene 8480
Tssr164658 Y 2390504 to 2390508 4 + TSS region transcription start site region 164658
Gm29553 Y 2397266 to 2397544 278 - pseudogene predicted gene 29553
Gm18178 Y 2427277 to 2441974 14697 + pseudogene predicted gene, 18178
Gm22119 Y 2446010 to 2446108 98 - miRNA gene predicted gene, 22119
Gm46718 Y 2446280 to 2446618 338 + pseudogene predicted gene, 46718
Gm46697 Y 2457872 to 2463411 5539 + pseudogene predicted gene, 46697
Tssr164659 Y 2519485 to 2519494 9 + TSS region transcription start site region 164659
Vmn2r-ps137 Y 2529348 to 2532653 3305 + pseudogene vomeronasal 2, receptor, pseudogene 137
Cpgi23079 Y 2532347 to 2532607 260 CpG island CpG island 23079
Vmn2r-ps138 Y 2535822 to 2535962 140 + pseudogene vomeronasal 2, receptor, pseudogene 138
Gm28630 Y 2552500 to 2552997 497 + pseudogene predicted gene 28630
Gm28629 Y 2597674 to 2597936 262 + pseudogene predicted gene 28629
H2al2c Y 2599099 to 2599434 335 + protein coding gene H2A histone family member L2C
Uba1y-ps1 Y 2637211 to 2647300 10089 - pseudogene ubiquitin-activating enzyme, Chr Y, pseudogene 1
Sry Y 2662471 to 2663658 1187 - protein coding gene sex determining region of Chr Y
Gm18798 Y 2679239 to 2689042 9803 + pseudogene predicted gene, 18798
H2al2b Y 2720339 to 2720674 335 - protein coding gene H2A histone family member L2B
Gm28628 Y 2721836 to 2722099 263 - pseudogene predicted gene 28628
Gm4064 Y 2785165 to 2796205 11040 - protein coding gene predicted gene 4064
Gm6137 Y 2806115 to 2806692 577 - pseudogene predicted gene 6137
Gm8498 Y 2825380 to 2826353 973 + pseudogene predicted gene 8498
Rbmy Y 2830680 to 2841854 11174 + protein coding gene RNA binding motif protein, Y chromosome
Gm8502 Y 2856974 to 2857874 900 + pseudogene predicted gene 8502
Gm10256 Y 2862139 to 2873496 11357 + protein coding gene predicted gene 10256
Gm8506 Y 2895798 to 2896626 828 + pseudogene predicted gene 8506
Gm10352 Y 2900989 to 2912206 11217 + protein coding gene predicted gene 10352
Gm8510 Y 2927358 to 2928252 894 + pseudogene predicted gene 8510
Gm29289 Y 2932582 to 2939416 6834 + protein coding gene predicted gene 29289