Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:99790154-101394869

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169 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pcna-ps1 X 99796471 to 99797663 1192 + pseudogene proliferating cell nuclear antigen pseudogene 1
Cpgi22854 X 99819701 to 99821825 2124 CpG island CpG island 22854
Tssr161604 X 99820158 to 99820171 13 + TSS region transcription start site region 161604
Tssr161605 X 99820183 to 99820200 17 + TSS region transcription start site region 161605
Tmem28 X 99821069 to 99846345 25276 + protein coding gene transmembrane protein 28
DXDcr3 X 99824922 to 99825017 95 DNA segment DNA Segment, Chr X, Derry C. Roopenian 3
Cpgi22855 X 99853308 to 99853541 233 CpG island CpG island 22855
Cpgi22856 X 99975479 to 99976092 613 CpG island CpG island 22856
Tssr161606 X 99975570 to 99975649 79 + TSS region transcription start site region 161606
Cpgi22857 X 99976327 to 99976597 270 CpG island CpG island 22857
Gm14832 X 100156635 to 100156956 321 + pseudogene predicted gene 14832
Gm14829 X 100329692 to 100330828 1136 + pseudogene predicted gene 14829
Gm14828 X 100337514 to 100338665 1151 + pseudogene predicted gene 14828
Mir676 X 100381097 to 100381185 88 + miRNA gene microRNA 676
Eda X 100400760 to 99975606 -425154 + protein coding gene ectodysplasin-A
Awat2 X 100402221 to 100442717 40496 - protein coding gene acyl-CoA wax alcohol acyltransferase 2
Tssr163845 X 100412591 to 100412606 15 - TSS region transcription start site region 163845
Tssr161607 X 100428906 to 100428912 6 + TSS region transcription start site region 161607
Otud6a X 100429013 to 100429885 872 + protein coding gene OTU domain containing 6A
Cpgi22858 X 100429042 to 100429933 891 CpG island CpG island 22858
Igbp1 X 100494291 to 100516125 21834 + protein coding gene immunoglobulin (CD79A) binding protein 1
Tssr161608 X 100494334 to 100494366 32 + TSS region transcription start site region 161608
Tssr161609 X 100524258 to 100524288 30 + TSS region transcription start site region 161609
Tssr161610 X 100524831 to 100524844 13 + TSS region transcription start site region 161610
Dgat2l6 X 100524838 to 100546108 21270 + protein coding gene diacylglycerol O-acyltransferase 2-like 6
Tssr161611 X 100524870 to 100524881 11 + TSS region transcription start site region 161611
Tssr161612 X 100572234 to 100572265 31 + TSS region transcription start site region 161612
Awat1 X 100572251 to 100578205 5954 + protein coding gene acyl-CoA wax alcohol acyltransferase 1
Gm6175 X 100585009 to 100585408 399 + pseudogene predicted gene 6175
Tssr161613 X 100585438 to 100585463 25 + TSS region transcription start site region 161613
P2ry4 X 100590154 to 100594869 4715 - protein coding gene pyrimidinergic receptor P2Y, G-protein coupled, 4
Tssr163846 X 100594860 to 100594876 16 - TSS region transcription start site region 163846
Arr3 X 100605497 to 100618493 12996 + protein coding gene arrestin 3, retinal
Tssr161614 X 100605535 to 100605548 13 + TSS region transcription start site region 161614
Pdzd11 X 100622880 to 100625974 3094 - protein coding gene PDZ domain containing 11
Cpgi22859 X 100625818 to 100626567 749 CpG island CpG island 22859
Tssr163847 X 100625883 to 100625900 17 - TSS region transcription start site region 163847
Tssr163848 X 100625901 to 100625954 53 - TSS region transcription start site region 163848
Kif4 X 100626065 to 100727271 101206 + protein coding gene kinesin family member 4
Tssr161615 X 100626072 to 100626158 86 + TSS region transcription start site region 161615
Tssr163849 X 100626597 to 100626611 14 - TSS region transcription start site region 163849
Tssr161616 X 100656447 to 100656451 4 + TSS region transcription start site region 161616
Tssr161617 X 100706841 to 100706842 1 + TSS region transcription start site region 161617
Tssr161618 X 100729818 to 100729823 5 + TSS region transcription start site region 161618
Tssr161619 X 100729836 to 100729846 10 + TSS region transcription start site region 161619
Gdpd2 X 100729873 to 100738895 9022 + protein coding gene glycerophosphodiester phosphodiesterase domain containing 2
Tssr161620 X 100729917 to 100729963 46 + TSS region transcription start site region 161620
Tssr161621 X 100729980 to 100729994 14 + TSS region transcription start site region 161621
Tssr161622 X 100730119 to 100730122 3 + TSS region transcription start site region 161622
Tssr161623 X 100730126 to 100730141 15 + TSS region transcription start site region 161623
Tssr161624 X 100730156 to 100730167 11 + TSS region transcription start site region 161624
Tssr161625 X 100730178 to 100730189 11 + TSS region transcription start site region 161625
Gm14866 X 100736983 to 100740929 3946 - unclassified non-coding RNA gene predicted gene 14866
DXMit229 X 100739674 to 100739774 100 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 229
Tssr161626 X 100740905 to 100740907 2 + TSS region transcription start site region 161626
Gm14902 X 100740995 to 100748671 7676 + lincRNA gene predicted gene 14902
Tssr5653 X 100741090 to 100741094 4 + TSS region transcription start site region 5653
Gm22160 X 100749421 to 100749748 327 + unclassified non-coding RNA gene predicted gene, 22160
DXMit169 X 100756254 to 100756364 110 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 169
DXMit1001 X 100757760 to 100757908 148 DNA segment DNA Segment, Chr X, Massachusetts Institute of Technology 1001
Cpgi22860 X 100767656 to 100768513 857 CpG island CpG island 22860
Tssr161627 X 100767719 to 100767742 23 + TSS region transcription start site region 161627
Dlg3 X 100767722 to 100818410 50688 + protein coding gene discs large MAGUK scaffold protein 3
Tssr161628 X 100774790 to 100774807 17 + TSS region transcription start site region 161628
Cpgi22861 X 100777005 to 100777486 481 CpG island CpG island 22861
Tssr161629 X 100777243 to 100777268 25 + TSS region transcription start site region 161629
Tssr161630 X 100777273 to 100777296 23 + TSS region transcription start site region 161630
Tssr161631 X 100777306 to 100777313 7 + TSS region transcription start site region 161631
Tssr161632 X 100795449 to 100795476 27 + TSS region transcription start site region 161632
Tssr5654 X 100796581 to 100796620 39 + TSS region transcription start site region 5654
Tssr161633 X 100798415 to 100798431 16 + TSS region transcription start site region 161633
Tex11 X 100838648 to 101059639 220991 - protein coding gene testis expressed gene 11
Gm19083 X 100969419 to 100971848 2429 - pseudogene predicted gene, 19083
Gm24577 X 101005821 to 101005883 62 + snRNA gene predicted gene, 24577
Gm27510 X 101005896 to 101005959 63 + snRNA gene predicted gene, 27510
Gm14901 X 101059010 to 101059292 282 + pseudogene predicted gene 14901
Cpgi22862 X 101059561 to 101059879 318 CpG island CpG island 22862
Tssr163850 X 101059614 to 101059642 28 - TSS region transcription start site region 163850
Tssr163851 X 101059643 to 101059654 11 - TSS region transcription start site region 163851
Tssr163852 X 101059655 to 101059664 9 - TSS region transcription start site region 163852
Gm9078 X 101062260 to 101063058 798 + pseudogene predicted gene 9078
Gm3820 X 101066824 to 101067704 880 - pseudogene predicted gene 3820
Tssr163853 X 101067720 to 101067745 25 - TSS region transcription start site region 163853
Slc7a3 X 101079210 to 101086020 6810 - protein coding gene solute carrier family 7 (cationic amino acid transporter, y+ system), member 3
Tssr163854 X 101081979 to 101082024 45 - TSS region transcription start site region 163854
Tssr163855 X 101084246 to 101084259 13 - TSS region transcription start site region 163855
Tssr161634 X 101087387 to 101087393 6 + TSS region transcription start site region 161634
Snx12 X 101097786 to 101222563 124777 - protein coding gene sorting nexin 12
DXMit41 X 101098404 to 101098595 191 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 41
E130102C15Rik X 101131600 to 101132989 1389 unclassified gene RIKEN cDNA E130102C15 gene
Gm24061 X 101141433 to 101141552 119 - snoRNA gene predicted gene, 24061
DXMit17 X 101163279 to 101163477 198 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 17
D030036P13Rik X 101201851 to 101204838 2987 unclassified gene RIKEN cDNA D030036P13 gene
Tssr163856 X 101212808 to 101212814 6 - TSS region transcription start site region 163856
Tssr163857 X 101212819 to 101212840 21 - TSS region transcription start site region 163857
Tssr163858 X 101212864 to 101212884 20 - TSS region transcription start site region 163858
Tssr163859 X 101212891 to 101212912 21 - TSS region transcription start site region 163859
Tssr163860 X 101213444 to 101213460 16 - TSS region transcription start site region 163860
Tssr163861 X 101213486 to 101213530 44 - TSS region transcription start site region 163861
Cpgi22863 X 101222179 to 101222791 612 CpG island CpG island 22863
Tssr163862 X 101222426 to 101222561 135 - TSS region transcription start site region 163862
Gm14842 X 101237993 to 101238261 268 + pseudogene predicted gene 14842
Tssr161635 X 101242735 to 101242738 3 + TSS region transcription start site region 161635
Gm22472 X 101242738 to 101242871 133 + snRNA gene predicted gene, 22472
Tssr161636 X 101254153 to 101254171 18 + TSS region transcription start site region 161636
Cpgi22864 X 101254162 to 101255190 1028 CpG island CpG island 22864
Tssr161637 X 101254466 to 101254495 29 + TSS region transcription start site region 161637
Foxo4 X 101254528 to 101260873 6345 + protein coding gene forkhead box O4
Tssr161638 X 101254559 to 101254574 15 + TSS region transcription start site region 161638
Tssr161639 X 101260172 to 101260179 7 + TSS region transcription start site region 161639
Gm614 X 101261376 to 101263992 2616 - protein coding gene predicted gene 614
Gm20489 X 101261405 to 101269023 7618 - protein coding gene predicted gene 20489
Tssr163863 X 101263986 to 101264002 16 - TSS region transcription start site region 163863
Tssr163864 X 101264018 to 101264027 9 - TSS region transcription start site region 163864
Il2rg X 101264385 to 101268255 3870 - protein coding gene interleukin 2 receptor, gamma chain
Tssr163865 X 101264648 to 101264674 26 - TSS region transcription start site region 163865
Tssr163866 X 101264740 to 101264749 9 - TSS region transcription start site region 163866
Tssr163867 X 101264765 to 101264772 7 - TSS region transcription start site region 163867
Tssr163868 X 101264794 to 101264815 21 - TSS region transcription start site region 163868
Tssr163869 X 101264890 to 101264907 17 - TSS region transcription start site region 163869
Tssr163870 X 101264910 to 101264932 22 - TSS region transcription start site region 163870
Tssr163871 X 101264933 to 101264944 11 - TSS region transcription start site region 163871
Tssr163872 X 101264953 to 101264965 12 - TSS region transcription start site region 163872
Tssr163873 X 101264972 to 101264983 11 - TSS region transcription start site region 163873
Tssr163874 X 101265404 to 101265446 42 - TSS region transcription start site region 163874
Tssr163875 X 101265663 to 101265676 13 - TSS region transcription start site region 163875
Tssr163876 X 101265718 to 101265731 13 - TSS region transcription start site region 163876
Tssr163877 X 101266254 to 101266275 21 - TSS region transcription start site region 163877
Tssr163878 X 101266791 to 101266804 13 - TSS region transcription start site region 163878
Tssr161640 X 101266886 to 101266903 17 + TSS region transcription start site region 161640
Tssr163879 X 101267353 to 101267375 22 - TSS region transcription start site region 163879
Tssr163880 X 101268182 to 101268209 27 - TSS region transcription start site region 163880
Tssr163881 X 101268218 to 101268229 11 - TSS region transcription start site region 163881
Cpgi22865 X 101273876 to 101274577 701 CpG island CpG island 22865
Tssr163882 X 101273945 to 101273959 14 - TSS region transcription start site region 163882
Tssr161641 X 101274023 to 101274034 11 + TSS region transcription start site region 161641
Med12 X 101274030 to 101297465 23435 + protein coding gene mediator complex subunit 12
Tssr161642 X 101274048 to 101274057 9 + TSS region transcription start site region 161642
Tssr161643 X 101274063 to 101274088 25 + TSS region transcription start site region 161643
Tssr161644 X 101274106 to 101274148 42 + TSS region transcription start site region 161644
Tssr161645 X 101274198 to 101274252 54 + TSS region transcription start site region 161645
Tssr161646 X 101276182 to 101276196 14 + TSS region transcription start site region 161646
Tssr161647 X 101276672 to 101276681 9 + TSS region transcription start site region 161647
Gm21986 X 101295839 to 101321348 25509 + unclassified non-coding RNA gene predicted gene 21986
Tssr161648 X 101299143 to 101299201 58 + TSS region transcription start site region 161648
Nlgn3 X 101299179 to 101321350 22171 + protein coding gene neuroligin 3
Tssr161649 X 101299207 to 101299218 11 + TSS region transcription start site region 161649
Tssr161650 X 101320041 to 101320060 19 + TSS region transcription start site region 161650
Tssr161651 X 101320169 to 101320184 15 + TSS region transcription start site region 161651
Tssr161652 X 101320914 to 101320930 16 + TSS region transcription start site region 161652
Tssr161653 X 101321241 to 101321246 5 + TSS region transcription start site region 161653
Cpgi22866 X 101332458 to 101333091 633 CpG island CpG island 22866
Tssr163883 X 101332503 to 101332549 46 - TSS region transcription start site region 163883
Gm31385 X 101338088 to 101341552 3464 + lncRNA gene predicted gene, 31385
Tssr161654 X 101376359 to 101376373 14 + TSS region transcription start site region 161654
Gjb1 X 101376378 to 101385629 9251 + protein coding gene gap junction protein, beta 1
Tssr161655 X 101377267 to 101377281 14 + TSS region transcription start site region 161655
Tssr161656 X 101377290 to 101377317 27 + TSS region transcription start site region 161656
Tssr161657 X 101377323 to 101377334 11 + TSS region transcription start site region 161657
Tssr161658 X 101383726 to 101383741 15 + TSS region transcription start site region 161658
Tssr161659 X 101383765 to 101383777 12 + TSS region transcription start site region 161659
Tssr161660 X 101383781 to 101383802 21 + TSS region transcription start site region 161660
Tssr161661 X 101384296 to 101384311 15 + TSS region transcription start site region 161661
Tssr161662 X 101384443 to 101384454 11 + TSS region transcription start site region 161662
Tssr161663 X 101384490 to 101384508 18 + TSS region transcription start site region 161663
Tssr161664 X 101384630 to 101384643 13 + TSS region transcription start site region 161664
Tssr163884 X 101384644 to 101384681 37 - TSS region transcription start site region 163884
Cpgi22867 X 101384665 to 101385045 380 CpG island CpG island 22867
Tssr161665 X 101384860 to 101384873 13 + TSS region transcription start site region 161665