Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:9947473-11488710

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sytl5 X 9885622 to 9994543 108921 + protein coding gene synaptotagmin-like 5
Gm5754 X 10011788 to 10012679 891 + pseudogene predicted gene 5754
Srpx X 10037977 to 10117661 79684 - protein coding gene sushi-repeat-containing protein
Tssr162976 X 10117597 to 10117677 80 - TSS region transcription start site region 162976
Gm33844 X 10117838 to 10120004 2166 + lncRNA gene predicted gene, 33844
Rpgr X 10158216 to 10216795 58579 - protein coding gene retinitis pigmentosa GTPase regulator
Tssr162977 X 10216437 to 10216482 45 - TSS region transcription start site region 162977
Cpgi22600 X 10216460 to 10216967 507 CpG island CpG island 22600
Tssr162978 X 10216685 to 10216765 80 - TSS region transcription start site region 162978
Tssr162979 X 10216918 to 10216921 3 - TSS region transcription start site region 162979
Otc X 10252305 to 10321024 68719 + protein coding gene ornithine transcarbamylase
Tssr160531 X 10252334 to 10252357 23 + TSS region transcription start site region 160531
Tssr160532 X 10252361 to 10252383 22 + TSS region transcription start site region 160532
Tssr160533 X 10254419 to 10254420 1 + TSS region transcription start site region 160533
Tssr160534 X 10276645 to 10276661 16 + TSS region transcription start site region 160534
Tssr160535 X 10312474 to 10312493 19 + TSS region transcription start site region 160535
Tssr160536 X 10319841 to 10319873 32 + TSS region transcription start site region 160536
DXMit89 X 10399986 to 10400132 146 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 89
Spha1 X 10399986 to 40832775 30432789 QTL sperm head anomaly 1
4933416E14Rik X 10415301 to 10417238 1937 - pseudogene RIKEN cDNA 4933416E14 gene
Tssr160537 X 10416640 to 10416662 22 + TSS region transcription start site region 160537
Tssr160538 X 10416675 to 10416682 7 + TSS region transcription start site region 160538
Cpgi22601 X 10484853 to 10485422 569 CpG island CpG island 22601
Tssr160539 X 10485121 to 10485163 42 + TSS region transcription start site region 160539
Tspan7 X 10485158 to 10596605 111447 + protein coding gene tetraspanin 7
Cpgi22602 X 10485773 to 10486050 277 CpG island CpG island 22602
Tssr160540 X 10487823 to 10487831 8 + TSS region transcription start site region 160540
Gm25885 X 10510048 to 10510156 108 + rRNA gene predicted gene, 25885
Tssr160541 X 10518624 to 10518627 3 + TSS region transcription start site region 160541
Tssr160542 X 10582134 to 10582137 3 + TSS region transcription start site region 160542
Tssr160543 X 10582145 to 10582154 9 + TSS region transcription start site region 160543
Tssr160544 X 10585549 to 10585572 23 + TSS region transcription start site region 160544
Tssr160545 X 10595702 to 10595787 85 + TSS region transcription start site region 160545
Tssr162980 X 10595718 to 10595752 34 - TSS region transcription start site region 162980
Tssr160546 X 10596004 to 10596030 26 + TSS region transcription start site region 160546
Cpgi22603 X 10650550 to 10650726 176 CpG island CpG island 22603
Gm5931 X 10660522 to 10660998 476 + pseudogene predicted pseudogene 5931
Gm14470 X 10680964 to 10681429 465 + pseudogene predicted gene 14470
Gm14480 X 10696932 to 10697364 432 - pseudogene predicted gene 14480
Tssr5591 X 10697431 to 10697434 3 - TSS region transcription start site region 5591
Gm10489 X 10707176 to 10717242 10066 - lincRNA gene predicted gene 10489
Tssr160547 X 10715036 to 10715057 21 + TSS region transcription start site region 160547
Cpgi22604 X 10717194 to 10717662 468 CpG island CpG island 22604
Mid1ip1 X 10717365 to 10719702 2337 + protein coding gene Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))
Tssr160548 X 10717439 to 10717450 11 + TSS region transcription start site region 160548
Tssr160549 X 10717451 to 10717491 40 + TSS region transcription start site region 160549
Tssr162981 X 10717451 to 10717456 5 - TSS region transcription start site region 162981
Gm14493 X 10717473 to 10718710 1237 - antisense lncRNA gene predicted gene 14493
Tssr160550 X 10717502 to 10717514 12 + TSS region transcription start site region 160550
Tssr160551 X 10717578 to 10717596 18 + TSS region transcription start site region 160551
Cpgi22605 X 10717983 to 10718699 716 CpG island CpG island 22605
Tssr160552 X 10718534 to 10718543 9 + TSS region transcription start site region 160552
DXMit102 X 10793966 to 10794095 129 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 102
Gm14473 X 10865077 to 10865633 556 - pseudogene predicted gene 14473
Gm33984 X 10884060 to 10912210 28150 + lncRNA gene predicted gene, 33984
Tssr160553 X 10911557 to 10911565 8 + TSS region transcription start site region 160553
Gm39494 X 10989143 to 10991957 2814 - lncRNA gene predicted gene, 39494
Gm14485 X 11020515 to 11021007 492 - pseudogene predicted gene 14485
Tssr162982 X 11126591 to 11126614 23 - TSS region transcription start site region 162982
Gm14481 X 11220607 to 11221235 628 + pseudogene predicted gene 14481
DXMit27 X 11247634 to 11247773 139 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 27
H2al1a X 11299257 to 11299757 500 + protein coding gene H2A histone family member L1A
H2al1b X 11302432 to 11302921 489 + protein coding gene H2A histone family member L1B
H2al1c X 11305655 to 11305972 317 + protein coding gene H2A histone family member L1C
H2al1d X 11308824 to 11309141 317 + protein coding gene H2A histone family member L1D
H2al1e X 11311934 to 11312427 493 + protein coding gene H2A histone family member L1E
H2al1f X 11315158 to 11315475 317 + protein coding gene H2A histone family member L1F
H2al1g X 11318256 to 11318764 508 + protein coding gene H2A histone family member L1G
H2al1h X 11321492 to 11321809 317 + protein coding gene H2A histone family member L1H
H2al1i X 11324659 to 11324976 317 + protein coding gene H2A histone family member L1I
H2al1j X 11327822 to 11328151 329 + protein coding gene H2A histone family member L1J
Gm39495 X 11362034 to 11363510 1476 + lncRNA gene predicted gene, 39495
Gm34077 X 11395860 to 11418640 22780 - lncRNA gene predicted gene, 34077
Gm34138 X 11434263 to 11437179 2916 - lncRNA gene predicted gene, 34138
Gm39496 X 11487873 to 11525733 37860 - lncRNA gene predicted gene, 39496