Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:99296327-100656597

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm39528 X 99287089 to 99320843 33754 + lncRNA gene predicted gene, 39528
Gm30704 X 99330146 to 99334710 4564 - lncRNA gene predicted gene, 30704
Gm14812 X 99405331 to 99443797 38466 - lincRNA gene predicted gene 14812
Gm14809 X 99407579 to 99414219 6640 - lincRNA gene predicted gene 14809
Gm30798 X 99454173 to 99457728 3555 + lncRNA gene predicted gene, 30798
Gm14808 X 99459025 to 99460753 1728 + antisense lncRNA gene predicted gene 14808
Tssr5651 X 99459051 to 99459061 10 + TSS region transcription start site region 5651
Pja1 X 99465734 to 99471268 5534 - protein coding gene praja ring finger ubiquitin ligase 1
Tssr163843 X 99467384 to 99467395 11 - TSS region transcription start site region 163843
Cpgi22852 X 99469679 to 99470088 409 CpG island CpG island 22852
Cpgi22853 X 99470343 to 99470871 528 CpG island CpG island 22853
Tssr163844 X 99470676 to 99470748 72 - TSS region transcription start site region 163844
Tssr5652 X 99542658 to 99542663 5 + TSS region transcription start site region 5652
Gm31155 X 99557333 to 99562946 5613 + lncRNA gene predicted gene, 31155
Gm14816 X 99687481 to 99687774 293 - pseudogene predicted gene 14816
Gm41898 X 99711306 to 99730825 19519 + lncRNA gene predicted gene, 41898
Pcna-ps1 X 99796471 to 99797663 1192 + pseudogene proliferating cell nuclear antigen pseudogene 1
Cpgi22854 X 99819701 to 99821825 2124 CpG island CpG island 22854
Tssr161604 X 99820158 to 99820171 13 + TSS region transcription start site region 161604
Tssr161605 X 99820183 to 99820200 17 + TSS region transcription start site region 161605
Tmem28 X 99821069 to 99846345 25276 + protein coding gene transmembrane protein 28
DXDcr3 X 99824922 to 99825017 95 DNA segment DNA Segment, Chr X, Derry C. Roopenian 3
Cpgi22855 X 99853308 to 99853541 233 CpG island CpG island 22855
Cpgi22856 X 99975479 to 99976092 613 CpG island CpG island 22856
Tssr161606 X 99975570 to 99975649 79 + TSS region transcription start site region 161606
Cpgi22857 X 99976327 to 99976597 270 CpG island CpG island 22857
Gm14832 X 100156635 to 100156956 321 + pseudogene predicted gene 14832
Gm14829 X 100329692 to 100330828 1136 + pseudogene predicted gene 14829
Gm14828 X 100337514 to 100338665 1151 + pseudogene predicted gene 14828
Mir676 X 100381097 to 100381185 88 + miRNA gene microRNA 676
Eda X 100400760 to 99975606 -425154 + protein coding gene ectodysplasin-A
Awat2 X 100402221 to 100442717 40496 - protein coding gene acyl-CoA wax alcohol acyltransferase 2
Tssr163845 X 100412591 to 100412606 15 - TSS region transcription start site region 163845
Tssr161607 X 100428906 to 100428912 6 + TSS region transcription start site region 161607
Otud6a X 100429013 to 100429885 872 + protein coding gene OTU domain containing 6A
Cpgi22858 X 100429042 to 100429933 891 CpG island CpG island 22858
Igbp1 X 100494291 to 100516125 21834 + protein coding gene immunoglobulin (CD79A) binding protein 1
Tssr161608 X 100494334 to 100494366 32 + TSS region transcription start site region 161608
Tssr161609 X 100524258 to 100524288 30 + TSS region transcription start site region 161609
Tssr161610 X 100524831 to 100524844 13 + TSS region transcription start site region 161610
Dgat2l6 X 100524838 to 100546108 21270 + protein coding gene diacylglycerol O-acyltransferase 2-like 6
Tssr161611 X 100524870 to 100524881 11 + TSS region transcription start site region 161611
Tssr161612 X 100572234 to 100572265 31 + TSS region transcription start site region 161612
Awat1 X 100572251 to 100578205 5954 + protein coding gene acyl-CoA wax alcohol acyltransferase 1
Gm6175 X 100585009 to 100585408 399 + pseudogene predicted gene 6175
Tssr161613 X 100585438 to 100585463 25 + TSS region transcription start site region 161613
P2ry4 X 100590154 to 100594869 4715 - protein coding gene pyrimidinergic receptor P2Y, G-protein coupled, 4
Tssr163846 X 100594860 to 100594876 16 - TSS region transcription start site region 163846
Arr3 X 100605497 to 100618493 12996 + protein coding gene arrestin 3, retinal
Tssr161614 X 100605535 to 100605548 13 + TSS region transcription start site region 161614
Pdzd11 X 100622880 to 100625974 3094 - protein coding gene PDZ domain containing 11
Cpgi22859 X 100625818 to 100626567 749 CpG island CpG island 22859
Tssr163847 X 100625883 to 100625900 17 - TSS region transcription start site region 163847
Tssr163848 X 100625901 to 100625954 53 - TSS region transcription start site region 163848
Kif4 X 100626065 to 100727271 101206 + protein coding gene kinesin family member 4
Tssr161615 X 100626072 to 100626158 86 + TSS region transcription start site region 161615
Tssr163849 X 100626597 to 100626611 14 - TSS region transcription start site region 163849
Tssr161616 X 100656447 to 100656451 4 + TSS region transcription start site region 161616