Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region X:9882334-10622357

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sytl5 X 9885622 to 9994543 108921 + protein coding gene synaptotagmin-like 5
Gm39493 X 9933835 to 9939308 5473 - lncRNA gene predicted gene, 39493
Gm5754 X 10011788 to 10012679 891 + pseudogene predicted gene 5754
Srpx X 10037977 to 10117661 79684 - protein coding gene sushi-repeat-containing protein
Tssr162976 X 10117597 to 10117677 80 - TSS region transcription start site region 162976
Gm33844 X 10117838 to 10120004 2166 + lncRNA gene predicted gene, 33844
Rpgr X 10158216 to 10216795 58579 - protein coding gene retinitis pigmentosa GTPase regulator
Tssr162977 X 10216437 to 10216482 45 - TSS region transcription start site region 162977
Cpgi22600 X 10216460 to 10216967 507 CpG island CpG island 22600
Tssr162978 X 10216685 to 10216765 80 - TSS region transcription start site region 162978
Tssr162979 X 10216918 to 10216921 3 - TSS region transcription start site region 162979
Otc X 10252305 to 10321024 68719 + protein coding gene ornithine transcarbamylase
Tssr160531 X 10252334 to 10252357 23 + TSS region transcription start site region 160531
Tssr160532 X 10252361 to 10252383 22 + TSS region transcription start site region 160532
Tssr160533 X 10254419 to 10254420 1 + TSS region transcription start site region 160533
Tssr160534 X 10276645 to 10276661 16 + TSS region transcription start site region 160534
Tssr160535 X 10312474 to 10312493 19 + TSS region transcription start site region 160535
Tssr160536 X 10319841 to 10319873 32 + TSS region transcription start site region 160536
Spha1 X 10399986 to 40832775 30432789 QTL sperm head anomaly 1
DXMit89 X 10399986 to 10400132 146 DNA segment DNA segment, Chr X, Massachusetts Institute of Technology 89
4933416E14Rik X 10415301 to 10417238 1937 - pseudogene RIKEN cDNA 4933416E14 gene
Tssr160537 X 10416640 to 10416662 22 + TSS region transcription start site region 160537
Tssr160538 X 10416675 to 10416682 7 + TSS region transcription start site region 160538
Cpgi22601 X 10484853 to 10485422 569 CpG island CpG island 22601
Tssr160539 X 10485121 to 10485163 42 + TSS region transcription start site region 160539
Tspan7 X 10485158 to 10596605 111447 + protein coding gene tetraspanin 7
Cpgi22602 X 10485773 to 10486050 277 CpG island CpG island 22602
Tssr160540 X 10487823 to 10487831 8 + TSS region transcription start site region 160540
Gm25885 X 10510048 to 10510156 108 + rRNA gene predicted gene, 25885
Tssr160541 X 10518624 to 10518627 3 + TSS region transcription start site region 160541
Tssr160542 X 10582134 to 10582137 3 + TSS region transcription start site region 160542
Tssr160543 X 10582145 to 10582154 9 + TSS region transcription start site region 160543
Tssr160544 X 10585549 to 10585572 23 + TSS region transcription start site region 160544
Tssr160545 X 10595702 to 10595787 85 + TSS region transcription start site region 160545
Tssr162980 X 10595718 to 10595752 34 - TSS region transcription start site region 162980
Tssr160546 X 10596004 to 10596030 26 + TSS region transcription start site region 160546